Genomic Location: Scaffold_2512__1_contigs__length_42139:36297...37316
NR annotation: NBB82128.1, GTP 3',8-cyclase MoaA [Alphaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN39554-RA |
| Transcript |
| ANN39554-RA |
| Protein |
| ANN39554-RA |
| UniProt accession | Description |
|---|---|
| Q139F2 | GTP 3',8-cyclase OS=Rhodopseudomonas palustris (strain BisB5) OX=316057 GN=moaA PE=3 SV=1 |
| Q98MK6 | GTP 3',8-cyclase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=moaA PE=3 SV=1 |
| B3PQ08 | GTP 3',8-cyclase OS=Rhizobium etli (strain CIAT 652) OX=491916 GN=moaA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001789 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06463 all species → | Mob_synth_C | Molybdenum Cofactor Synthesis C | Domain | Interproscan |
| PF04055 all species → | Radical_SAM | Radical SAM superfamily | Domain | Interproscan |
| PF13353 all species → | Fer4_12 | 4Fe-4S single cluster domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050105 all species → | Family | Molybdenum cofactor biosynthesis MoaA/MoaC | Interproscan |
| IPR010505 all species → | Domain | Molybdenum cofactor biosynthesis protein A-like, twitch domain | Interproscan |
| IPR000385 all species → | Conserved_site | MoaA/NifB/PqqE, iron-sulphur binding, conserved site | Interproscan |
| IPR007197 all species → | Domain | Radical SAM | Interproscan |
| IPR013483 all species → | Family | Molybdenum cofactor biosynthesis protein A | Interproscan |
| IPR006638 all species → | Domain | Elp3/MiaA/NifB-like, radical SAM core domain | Interproscan |
| IPR013785 all species → | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22960 all species → | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006777 all species → | Biological Process | Mo-molybdopterin cofactor biosynthetic process | Interproscan |
| GO:0061798 all species → | Molecular Function | GTP 3',8'-cyclase activity | Interproscan |
| GO:0061799 all species → | Molecular Function | cyclic pyranopterin monophosphate synthase activity | Interproscan |
| GO:0019008 all species → | Cellular Component | obsolete molybdopterin synthase complex | Interproscan |
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03639 | moaA, CNX2; GTP 3',8-cyclase | EC:4.1.99.22 | Sulfur relay system | ko04122 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
