Genomic Location: Scaffold_5608__1_contigs__length_29021:13357...14223
NR annotation: KKT24001.1, Glyceraldehyde-3-phosphate dehydrogenase, type I [candidate division TM6 bacterium GW2011_GWF2_43_87]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN39722-RA |
| Transcript |
| ANN39722-RA |
| Protein |
| ANN39722-RA |
| UniProt accession | Description |
|---|---|
| Q82IZ2 | Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=gap1 PE=1 SV=1 |
| E3VWI2 | Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Streptomyces arenae OX=29301 GN=gap2 PE=1 SV=1 |
| P54226 | Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Streptomyces arenae OX=29301 GN=gap1 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00044 all species → | Gp_dh_N | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Domain | Interproscan |
| PF02800 all species → | Gp_dh_C | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020828 all species → | Domain | Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain | Interproscan |
| IPR020831 all species → | Family | Glyceraldehyde/Erythrose phosphate dehydrogenase family | Interproscan |
| IPR020829 all species → | Domain | Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43148 all species → | GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
| GO:0004365 all species → | Molecular Function | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | Interproscan |
| GO:0006006 all species → | Biological Process | glucose metabolic process | Interproscan |
| GO:0016620 all species → | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00134 | GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) | EC:1.2.1.12 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
