Gene detail

Detailed information of ANN39744-RA in Montipora grisea

Genomic Location: Scaffold_3819__1_contigs__length_34463:15509...18412
NR annotation: MCH6583176.1, ammonium transporter [Pseudomonadota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN39744-RA

ATGAACTTACAGCTCGACATCGCGTGGATCCTGATTTGCGCCGCCCTGGTCATGCTGATGCAGGCGGGATTTTCCTGCCTGGAGAGCGGCCTGGTGCGCACCAAGAACAGCATCAACGTCGCCACCAAGAATTTCGTCGACTTTTGCGTGTCGTCGGCCATTTTCTGGCTGTTCGGCTTCGCGCTGATGTTCGGCGTGACCGCCGGCGGCCTGTTCGGTACCAGCGAATTCCTGTTCGACCCCACCGGCAAGGCTTGGCTGGCGGCATTTTTCGTGTTCCAAATGGGATTTTGCGGTACCGCCACCACGATCATCGCCGGCGCGGTGGCCGAGCGCATGCGTTTCGCCGGTTACCTCGCGGTGACCATCGTCATGTCGGCGTTGATCTACCCGGTCATGGGTCATTGGGTCTGGGGCGACGCCGCGGGCTTGAGTTCGGCCGGCTGGCTGCAAGACCTCGGCTTCATCGACTTCGCCGGCGGTACCGTGGTGCATTCGGTCGGCGGCTGGGTTTCGCTGGCCGCGATCATCGTCATCGGGCCGCGCATCGGGCGCTTTAGCCGTAAGCAACCGCCGATCCAGGGGCACGATTTACCGGTGGCCGCGCTCGGCGTGTTCCTGCTCTGGTTCGGCTGGTTCGGGTTCAACGGCGGCAGCACGCTGGGTTTGACCGCGGAAGTGCCGCTGGTCATTCTGAACACGATGATTTCCGGCGCCTTCGGCGGCTTGACTGCGCTCGCCTTGTCGTGGCGCCTCAGCGGCCGGCCCGACGTCGGATTAACCATGAACGGCGCGCTCGCCGGCCTGGTCGGCATTACCGCATTGGCACATATCGCCTCCCCCGGCTCGGCCCTGATCGTCGGCAGCGTCGCCGCATCGATCATGTACGGCATTACCCGGCTGCTGGAAAAATTCAAGCTCGACGATGTCGTCGGCGCGGTGCCGGTGCATCTCGGCGCCGGCATCTGGGGCACGCTCGCGGTCGCGCTCTTCGGCGACCCCGCGGCCTGGGGCGGCGCACACGGCCGCTGGGAACAGCTTGCCATTCAGGCCACCGGCGTCGGCGTCTGTTTCGCCTGGGCTTTCGGCCTCGGCTTGAGTTTGCTGTGGCTGATCAACCGCTACTTTCCGCTGCGCACCGGCGGCAAGAGCGAGCGCATCGGCCTCAATGTCGCCGAGCACGGCGCCGCGACCGATACCGTCAATCTGCTGAACGCGATGAATCGTCAGCGCCGCGGCCACCGATTCTCCGGCCACGTCGCGGTCGAACCGCACACCGAGGTCGGTCAAATTGCGCGCCAGTATAACCGCGTGCTCGACGATATTGAGATCGTGCAGGCAAAACGCGAGGCCGAATCCAAACTGGCGCGCCAAATTCTCGAGGATGCGATTGAATCCCTGGCCGAGGGATTCGTGCTCTACGACGCGGAAGACAAATTCATCATGTGCAATCGACGTTATCGCGAATTTAACCAGGTTAGCATGGATAAACTGGTGCCCGGCGTCAGCTGGGAGGAATTCGTGCGCACCGGCGCCGAGCGCGGCCAGTACATGGACGTGCCCGATGGCGTGGACGCTTACGTCGAATCCTTCTCCTATCGCCGGAATAACATCGAGGAAGGCGAGCAGCACGAATTTCAAATGGCCGATGGCCGCTGGGTGGTCAGCGAACACCGGCGCACCCGCCAGGGCGGCATGGTCGGCATCAGTTTCGACGTCACCCAGCGCCGCGAACTGGAAGCGGAAACCGAACAGCAGCGCGAAGCCTTGCATCAAAGCGAAAAATTGAGCGCACTCGGCGAATTGCTGGCCGGCGTCGCGCATGAATTGAACAACCCATTGTCGGTCGTAGTCGGACAGTCGGTGCTGCTCGAAGAGACCGCCGACGATCGGCGCATCCTCGACCGGGCACAGCGTATCAGTACCGCCGCCAATCGCTGCGCGCGTATCGTCAAGACCTTCCTGGCGATGGCCAAGCAACAGCCGATGAAGCGCAAGGCGGTCGATTTCAATGAAATCGTCGAGGCCGCGGTCGAGGTGACCGGCTACGCGTTGCGTTCCAGCAATATCGAAACCGATCTCGAATTGGCGGCGGCTTTACCCGCAGCCTGGGGCGACGACAATTTGCTCGGCCAGGTAATGACCAACCTGATCATCAATGCTCAGCACGCGCTTTCGGAACAGGACGAACCGCGCCGACTCGGTATCGCCACATCGATCGACGATACCGCCAAGTTCGTTAGAGTCGACGTTAGCGACAATGGCCCCGGCATAGCGGAAGAAATCAGGGCGCGCATCTTCGAGCCGTTCTTCACCACCAAGGAAATCGGCACCGGCATCGGCTTGGCGGCGTGCCAGCGCATCGTCGAAGCGCATGGCGGTAGCATTGCGATCGATACCGCCCCGGGCGAAGGCACCACCTTCAGCATCAGCGTGCCGGTGGCGCGAGCGGGGCATGTCGAGGTTGAAACCGAAGCCGAGGTCGAAGCCGAAGCGACCTCGCCGCTGTCGATTCTGGTCATCGACGATGAAACCGAGGTCGCCGATATGCTCGCCCAGATCCTGAGCGCGGATCGGCACCGGGTCGAAGTCGCGCATCGCGGCAGCAGTGCGCTGGAAAAGATCGAGCAGCACGAATTCGACGTCATCCTAAGCGACCTGCGCATGAACGACATGGATGGCGAACAGGTCTATCACGCTTTGCAGCGCGATCATCAAGACTCGCTGTCGCGCCTGGCATTCGTCACCGGCGATACGGTCAGCCCGATGGCGCGGCGCTTCTTAAAAGCGGCCAACCGGCCTTACATCGAAAAGCCGGTCACGCCGCAGGAACTCAGAGACCTGGTGCATCGCGTCAAGCAGGACAATGAACCGATTAACTCAGTAACGAGGAGAATACAATGA

Transcript

ANN39744-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54148	Putative ammonium transporter sll0537 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=sll0537 PE=3 SV=1
O28528	Ammonium transporter Amt2 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=amt2 PE=3 SV=1
P54147	Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=sll0108 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011783 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12860 all species →	PAS_7	PAS fold	Domain	Interproscan
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR001905 all species →	Family	Ammonium transporter	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR018047 all species →	Conserved_site	Ammonium transporter, conserved site	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11730 all species →	AMMONIUM TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0097272 all species →	Biological Process	ammonium homeostasis	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03320	amt, AMT, MEP; ammonium transporter, Amt family	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.