Detailed information of ANN39999-RA in Montipora grisea

Genomic Location: Scaffold_5147__1_contigs__length_30183:26277...28324
NR annotation: ETX04265.1, tRNA-splicing ligase RtcB [Candidatus Entotheonella gemina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5JCZ1tRNA-splicing ligase RtcB OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=rtcB PE=3 SV=1
O29399tRNA-splicing ligase RtcB OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=rtcB PE=3 SV=1
Q6LXF9tRNA-splicing ligase RtcB OS=Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL) OX=267377 GN=rtcB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01951ArcheaseArchease protein family (MTH1598/TM1083)DomainInterproscan
PF01139RtcBtRNA-splicing ligase RtcBFamilyInterproscan
PF04069OpuACSubstrate binding domain of ABC-type glycine betaine transport systemFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036820Homologous_superfamilyArchease domain superfamilyInterproscan
IPR036025Homologous_superfamilytRNA-splicing ligase RtcB-like superfamilyInterproscan
IPR023572DomainArchease domainInterproscan
IPR001233FamilyRNA-splicing ligase, RtcBInterproscan
IPR007210DomainABC-type glycine betaine transport system, substrate-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11118UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008452Molecular FunctionRNA ligase activityInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0043190Cellular ComponentATP-binding cassette (ABC) transporter complexInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0000971Biological Processobsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphateInterproscan
GO:0003972Molecular FunctionRNA ligase (ATP) activityInterproscan

TOP