Gene detail

Detailed information of ANN40056-RA in Montipora grisea

Genomic Location: Scaffold_3051__1_contigs__length_38453:10885...12939
NR annotation: MBI3301775.1, dipeptide ABC transporter ATP-binding protein [Deltaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN40056-RA

ATGCAGGAAAACACGGCGTCCGCCCCGCTGCTGCGAGTACGCGACCTCAAGACCTATTTTCGGACCAAGGCCGGCCCGGCCCGGGCGGTCGACGGAGTGTCGTTTGAGCTGACCGGGGGCGAAACCCTGGCCCTGGTGGGAGAGTCGGGCAGCGGCAAAAGCGTAACCGCGCTGTCCATCATGCAGCTCGTCCCCGAGGCGGTCGGCTACCATGCCGGCGGAAGCATCGAGTACCTGGGCCGGGACATCACCCGACTGTCTGAGACGGGCAAACGCCGGCTGCGCGGCGACCAGCTGGCGATGATCTTTCAGGAGCCGATGACCGCCCTGAATCCGGTCCTGAGCGTTGGCTTTCAGCTGGTCGAGGCGTTGCGCCAGCACCGGCAACAGACGCTGGACGAGGCGCGTCAGCGGGCGATTGAGCTGCTCGGCCAAGTCAATATTCCCGACCCGGTCAAGCGTTTCGAGGAGTATCCCCACCAGCTGTCCGGCGGCATGAAGCAACGGGTGATGATCGCCATGGCCATGGCCGGCGATCCCAGACTGCTGATTGCCGACGAGCCGACGACCGCCCTGGATGTGACGATTCAGGCCCAGATTCTGGAGCTGATGAAAAGCCTGCAAGAGATCAACGGCATGGCGATTCTGCTCATCACCCACGATCTGGCCGTGGTGGCCCAGACAGCCGACCGGGTAGCGATCATGTACGCCGGGCAGATCGTCGAATACGCCCCCCGCGAGCGGCTGTTTGCCAATCCGGCCCATCCCTACACCATCCGGCTGCTCCAGTCTTTGCCGTCCGGCCAGCAGCGTCGCCACGCCCTGCAAACCATCGAGGGCCGTGTGCCCGCACCGACCCAGTTTCCGCCCGGCTGTCGCTTTGCCGACCGCTGCCACTTGGTTGAGGACAGGTGCCGGCGCCACGATCCAGCCCTGGTGACGGTGGAAACAGACCACACCGCAGCCTGTCTGCTGCATGACACGCCGTCTCAGGAAACTCGCCCCAGCACTACCACCATATCCGTCCGCCCCCAGCCCCGTCCGGCCCAGCCCGCCTCGGCTCAGACCCTGGTGCGGCTCAGCGGGCTGAAGGTCCACTTTCCCATCCGCCGAGGCATCCTCAAACGCACCGTCGGTTCGGTCAAGGCGGTCGATGGGGTCGATCTCGACATCCGCCGCAGCCACACCCTGGCCCTGGTCGGCGAGTCGGGCTGTGGCAAGACCACCCTGGGCAAGGCCGTGCTTCAACTGATCCGTCCCAGCGCCGGACAGGTGTGGTTTGACGGCGCCGACCTGACCGCCCTGGGTCGTCAGGCTCTGCACGCCTATCGGCGGCGTCTGCAAGTCGTGTTTCAGGACCCCTACGCGTCGCTCAACCAGCGCATGATGGTCGGCGAAATCGTCATGGAGGGCATGGCCGCCCACGGCATTGGCAAAAACCGCGCCGAACGCGAAGAACGGGCCAAGCACCTCCTGACCCAGGTCGGCCTTGACCCGGACATGATCCACCGCTACCCCCACGAGTTCTCGGGCGGCCAGCGCCAGCGGATCGGGATTGCCCGCTGCCTGGCGGTCGAGCCGGACTTTCTGGTGTGCGACGAGGCGACCAGCGCCCTCGACGTGTCCGTCCAGGCTCAGATTCTGAATCTGCTCCGCGACCTCCAGGCTCAGCTCGGCCTGACCTATCTGTTCATCACCCACAACCTCGGGCTGGTCGAATACTTTGCCGACGAGGTGGCGGTCATGTATCTGGGCCGGATTGTCGAGCGGGGCACGACCGAGCAGGTCTTTCGCAGCCCGCGCCACCCCTACACCCAGGTGCTGCTGTCAGCCGTGCCAAAGCCCGATCCGGCCAGCAGTCTGGAAAAAATCCGTCTGTCGGGCGACGTGCCCTCGCCGATCAACCCACCCCGCGGCTGTCATTTTCATCCCCGCTGCCCCTCGGCTCGGCCCGAGTGCCAGACCGTTGAACCGACCCACACCCAACTCGGCCACAATCACAGTGTGTGGTGCCATCTGTACACACCGGAGGAACATTGCCCTGTTGACAAGTGA

Transcript

ANN40056-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63396	Oligopeptide transport ATP-binding protein OppD OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=oppD PE=3 SV=1
P9WQJ4	Oligopeptide transport ATP-binding protein OppD OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=oppD PE=3 SV=1
P9WQJ5	Oligopeptide transport ATP-binding protein OppD OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=oppD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009449 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF08352 all species →	oligo_HPY	Oligopeptide/dipeptide transporter, C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013563 all species →	Domain	Oligopeptide/dipeptide ABC transporter, C-terminal	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050388 all species →	Family	ABC Transporter, Nickel and Peptide Import	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43297 all species →	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0015833 all species →	Biological Process	peptide transport	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN40056-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.