Gene detail

Detailed information of ANN40205-RA in Montipora grisea

Genomic Location: Scaffold_7846__1_contigs__length_23952:15625...18360
NR annotation: MCE2543866.1, ATP-binding cassette domain-containing protein [Acidobacteriota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN40205-RA

ATGGGCGCCGTCCTCGTTACCGGCGGGGCAGGCTATATCGGGAGCCACGCGGCACACGCGCTGCGCGCTGCCGGCCGCGACGTGGTCGTGCTCGACAGCCTGCAGGCCGGACACCGCGAGGCGGTGCGCGGCATGCCGCTGGTGACCGCCGATATCGCCGACACCGCAGCGGTCCGCGATACGATCCGGCGCTACCGTGTGACGTCCGCGATGCACTTCGCGGCGCTCCAATCCGTGGGCGATTCGGTGCGGGCCCCCGCCCGCTACTACGACAACAATGTCGTCCGGACGCTGGCCCTGCTCGACGCGCTGGTGGGCGAATCGGTCGAGCAACTGGTTTTCTCGTCGACGGCAGCGGTCTACGGTGAGCCTGCCGACATCCCGATCGCCGAGGGCCATCCCACGCGGCCGATCAACGCGTACGGCGACACGAAGCTCGCCGTCGAGCGGGCGTTGCGCCACTACGAGCGGGCGTACGGCCTGCGATCGGTGTGCCTGCGGTATTTCAACGCCGCCGGTGCGGATCCTCGCGGCGAGATCGGGGAAGACCACGAACCGGAAGAACATCTGATTCCGCGGGCGCTGGCGGCGGCGGTGGACGGGCCGCCGCTCGTCGTCTTCGGTGACGACTACGCCACCGAAGACGGTACGTGCCGGCGGGACTACGTGCACGTCTCCGACCTGGCGGCGGCGCATCGGCTGGCGCTCGCCGCGCTCGATGCGGGCAAGCCGTCCGGCGTCTACAACCTCGGGAACGGCCGCGCTTTTTCGGTCCGTGATGTCGTCGCGGCCGTCGAGCGCGTCACGGGCCAGCACGTGTGCCACGCGTTGGGACCCCGGAGGCCGGGCGATCCGGCGGTGCTGCTGGCCGCGAGCGCGCGCGCGCGGTCCGAGCTCGGCTTGGAAGCCCATCTACGAGGAGCTCGACGTGATCGTCGAAACGGCGTGGCGCTGGCATCGCACGCACCCGCGCGGGTACGCGTCGTGAACCAGCTCTGCAGGCTGTACAGCTACGGCTATCCGCACCGCCACTGGTTCGCGGGCGCCGTGGTCGCCATGCTGTTCTACGCGGCCGCTCACACCGGGCGGACCTATCTGTTCAAGCCGATTTTCGACGATGTGTTGGCCAACCGCACCGGACTCGCCGGGGTCCTCTCGGCTGTCATCGGGCTGAGCGTGTGCAAGGGGCTCGCGGAGTACTTCTCGGTCTACCTGATGACCGGCGTCGGGGAGCGGCTGGTCCGCGACCTGCGGAGCCGGCTGTTCGGCCACATCCTGGCCCAGTCGGCCGGGTTTTTCGCCTGCCGCACCACCGGCGCGCTGATGTCCCGGGTCACGAACGACATCAGCCGGATCCAGTACGCTGTGGCGCAGACGCTGGGCGATCTGCTGCGGGAGTCGGTCACGCTGGTCGGCCTGGCCGGCCTGCTCCTGTACCACGACGCGCGCCTGGCGCTCGTCTGCATGACGGGTGCTCCGGTGGTCGTCTATCCGTTGGTACGACTGGGCCAGCGCGTCCGGCGCACTACGCGGCGCGGTCAGGAAGAGCTGGAGCATCTGTCGCACATCACGGCCGAGGCGTTCGCCGGCCACCGCATCGTCAAGGCGTTCGCCGGCGAGCCGTACGAGCGGCAGCGTTTCGACCAGGCATCCGACCGGTTGTACCGGATGAACATGAAGGTCACCAGCTCGGTATCGGCGCTGCCGCCGCTCATGGAGTGGCTCGGCGCTTTGGGTATCGTCGGAGTCCTGTGGTACGGCAGCCGGGAGATTGCCCGAGGCGAGCTGACGTCCGGCGAGTTCACGCTGTTCGTCGCCGCCATGTTGCTGATGTACGCTCCGATCAAGCGGCTCAGTCGTGCGAATGCCAACATCCAGCAGGCGATCGCAGCCGCCGAGCGGGTGTTCGAGACGCTCGACATGCGCAGCGAGGCGGCCGACAAGCCGGGCGCACGGCCGCTGGCGGCTCTCCGCCGGTCGATCGAGTTTCGTAACGTCAGCTTCAGTTATGGGGACGGCGGCGGCGGGAACGTGCTCGATCAGGTGTCGTTCGAAGTGCAGGCCGGCCAGGTGGTCGCTGTCGTCGGTCTGAGCGGTGCGGGCAAGACGACGCTCGTGAATCTCGTGCCGCGCTTCTACGAGGTGACGGCCGGGGCGATTGCCATCGATGGCGTCGACATCCGGAATGTGACGCTCGAGTCCCTCCGGTCGCAGATCGGGATCGTCACCCAGGATACGGTGCTGTTCGATGACACGATCGGCAACAACATCGCCTATGCGGCGCCCTCCGCCTCGCGTTCGGAGGTCGAGGCGGCGGCCCGCGCGGCGCATGCGGACGAGTTCATCGCGATGCTGCCCGACGGCTACGACACGCTGATCGGCGACCGCGGGCAGCGGTTGTCCGGCGGGCAGCGCCAGCGGGTGGCCATCGCCCGGGCACTCCTGCGGAATTCGCCGATCCTCATCCTGGACGAGGCCACCTCGTCGCTCGACGCCGAATCGGAGCTGCTCGTGCAGGACGCGCTGGCGAAGCTGATGGCGAACCGGACCGCCTTCGTGATCGCCCATCGCCTGTCCACGGTGCGGCGCGCCGATCGGATCATCGTGCTCGACCGGGGCCGGGTGCGCGAAACCGGCCGCCACGAGGCGCTGCTGGCCGCACCGGACAGCCTGTACGCCAAGCTCTATGCACTGCAGCTGTTCGGCCGGGGGGGCGGCGGGGAGGACACGCGGTGA

Transcript

ANN40205-RA

Protein

Uniprot

Uniprot term	Description
Q2LVL0	ATP-dependent lipid A-core flippase OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=msbA PE=3 SV=1
Q6AJW3	ATP-dependent lipid A-core flippase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) OX=177439 GN=msbA PE=3 SV=1
Q3SFZ6	ATP-dependent lipid A-core flippase OS=Thiobacillus denitrificans (strain ATCC 25259 / T1) OX=292415 GN=msbA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01370	Epimerase	NAD dependent epimerase/dehydratase family	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR001509	Domain	NAD-dependent epimerase/dehydratase	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR005886	Family	UDP-glucose 4-epimerase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0034040	Molecular Function	ATPase-coupled lipid transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0003978	Molecular Function	UDP-glucose 4-epimerase activity	Interproscan
GO:0006012	Biological Process	galactose metabolic process	Interproscan