Gene detail

Detailed information of ANN40239-RA in Montipora grisea

Genomic Location: Scaffold_1217__1_contigs__length_59421:24290...26974
NR annotation: MCE2407482.1, aconitate hydratase AcnA [Pseudomonadales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN40239-RA

ATGAGTTTAGATTCCTTCAAGTGTCGTTCAACGTTTAACATAAACGATCGCAAATACACATACTACGACCTCAATGTAGCTGCTGAACATGGGATTGGCGACGTCTCAAGACTCCCAATTTCGCTAAAGGTCCTATTTGAGAACTTGCTCAGATTCGAAGACGGCGACACGGTTACACGAGATGATATACGTTCACTCGGCCGATGGACCGAAAGACCGACGCCTAATCAGGAAATCGCCTTTCGACCCGCCCGAGTCCTTATGCAGGACTTCACCGGTGTGCCAGCCGTCGCCGACTTGGCGGCGATGCGAGGTGCAGTCTATCAAGCCGGTTACGATCCATCGCTAATTAACCCCGTAACCAGAGTGGATCTTGTCATCGATCATTCTGTTATGGTCGATGCGTTTGGATCAGCAGCTGCGTTTGGTAGCAACGTTGCGAATGAGATGGGTCGCAACGGTGAGCGCTACCGTTTTCTGAGGTGGGGTCAGCAGGCATTCGACAATTTTCACGTCGTTCCACCAGGAACCGGGATCTGTCATCAGGTCAATTTGGAACACCTTGCACGGGTTGTTTGGACATCAAATAACGGATATGATTTAGCATACCCGGATACTGTCGTTGGAACCGACAGTCATACAACAATGATCAATGGCCTGGGCATAGTGGGTTGGGGTGTCGGAGGCATCGAAGCTGAAGCCGCTATGTTAGCTCAACCCATATCGATGTTAGTTCCCGATGTAGTAGGTATGAGAATTACTGGCGAACTTCGGGACGGTATTACAGCAACGGATTTGGTGTTGCGAGTTGTTCAGATTTTGAGAAAACACGGCGTGGTGGGGAAGTTTGTCGAGTTCTATGGCCCCGGCCTCGGACAATTGGCATTGGCGGATCGAGCTACCATCGCAAACATGGCACCAGAATACGGTGCAACCTGCGGTTTCTTTCCGATCGACCAAGAGACGATCGACTACTTGCAACTATCGGCACGTCCAAGCCATACCGTAGCCTTAGTCGAACATTATGCTAAGAAGCAAGGGATGTGGCGCGACGAGGCGTGTGAGCCGGTCTTTGCAGAAAATCTTGAATTGAATCTTGAAACTGTAGAGCCATCGCTTGCTGGGCCGAAACGTCCTCAAGACCGTGTCCCGCTTGGCGCACTGAAGGAAGCGACGAACGAAGCAATCGTTCAATCGGGTGAAAATCCGGACTCAGCACGGATTCTTGCAGCCAACCATGAATTCGACCTTGGACATGGCGATGTGGTCATCGCCGCGATAACGTCATGCACGAACACCTCAAACCCCGCTGTTATGCTGGCTGCGGGGCTTGTAGCGCGAAAAGCACGTGCGTTAGGCTTGAATGTCAAGCCATGGGTCAAAACATCATTGGCACCGGGGTCGAAGGTCGTAACGGAATATCTCGAGCAAACAGGACTACAAACCGATCTCGACGCAATTGGATTCAATTTGGTTGGATACGGGTGTACAACATGTATCGGGAATTCTGGTCCGTTGCCTGACATCGTATCGCAAGCAATTGCAGAAGGCGATTTGGTTGTGTCGTCCGTATTGTCAGGTAATCGCAATTTTGAAGGTCGAGTACATCAGGAAGTTCGTACCAATTGGTTGGCATCGCCACCATTGGTCGTGGCCTACGCACTTGCAGGTTCAACACGCCTTAACTTGACCGTCGATCGAATTGGGGTGAGTGCAACCGGGTCCGATGTTTTTCTCAAAGACATCTGGCCAACGAATCGAGAAGTAGCCGGAATGGCAGCTCAAATTGATGCCAGCATGTTCAGTCGGCAATATGCGGATGTGTTTGCCGGTCCCGATGCTTGGCAAGCAATCGATGCTGGCGAAGAAAGCACGTACGGCTGGGATGACTCCACGTACATCAAGCAACCGCCGTTCTTCGCGATCGGAGACACGGTGGAACAAAGCGTCGTGGTAACTGATGCGCGCATCTTAGCGATGCTGGGTGATTCCGTGACGACCGACCACATTTCGCCGGCAGGGGCAATTCAACCAGCAAGTCCAGCGGGAGAGTACCTGCAACAGCAAGGGGTGCAAATACGCGACTTCAATTCATACGGGTCGCGACGCGGCAACCACGAAGTGATGGCTCGAGGTACGCTTGCAAACATTCGAATTCGGAATGAGATGCTTCCTGGCGTTGAAGGTGGATATACAAAACACTTTCCCACCGGTGATCAAGTTTCAATTTATGATGCGGCGATGCGCTATGCGGGTCAAGATACGCCGCTGGTCGTCGTCGCAGGCAAGGAATATGGCACTGGTTCTAGTCGTGATTGGGCGGCGAAAGGGACACGCCTGCTCGGAGTGAAAGCCGTTGTCGCCGAAAGTTTCGAACGTATTCATCGGACGAATTTGGTCGGTATGGGCGTCTTGCCGCTTCAATTCATGCCAGGCGATACGCGGAAATCATTGCGTTTAACTGGCGATGAGACAATCGATATCAGGTTTCCTAACGGTGTGACTGAAATCCAGCCGCTTCAAGAATTGATTCTCACAGTGAAAAGCTCTGACAACGTACATGTAAGAGTTGCCGTACGGAGTCGCCTGGACACGGAGAATGAGATTCGTTATTTCAAAAGCGGCGGTATCCTGCAATTTGTATTGAACAAATTGGTGGATGCGGAGTCTCTCAGGGATTCGTAA

Transcript

ANN40239-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P37032	Aconitate hydratase A OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) OX=272624 GN=acn PE=1 SV=1
Q9I3F5	Aconitate hydratase A OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=acnA PE=3 SV=1
P25516	Aconitate hydratase A OS=Escherichia coli (strain K12) OX=83333 GN=acnA PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002370 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00330 all species →	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan
PF00694 all species →	Aconitase_C	Aconitase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001030 all species →	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR044137 all species →	Domain	Aconitase A, swivel domain	Interproscan
IPR000573 all species →	Domain	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	Interproscan
IPR006249 all species →	Family	Aconitase/Iron-responsive element-binding protein 2	Interproscan
IPR018136 all species →	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR015931 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR015928 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR036008 all species →	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11670 all species →	ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003994 all species →	Molecular Function	aconitate hydratase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan
GO:0030350 all species →	Molecular Function	iron-responsive element binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN40239-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.