Gene detail

Detailed information of ANN40372-RA in Montipora grisea

Genomic Location: Scaffold_2458__1_contigs__length_42584:13502...16230
NR annotation: MXY67578.1, ABC transporter ATP-binding protein [Acidobacteriia bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN40372-RA

ATGACCCTGTGCCATGATGAACCCGTGGGCGACTTGGCGCGCTTGTTCGGCTACATTCGCCCCCATTCCGCTCGCATCACGCTCGCGGTGGCCCTCATGGCGGCCGTCGGCGCATGCTACGGACTGTTCGCCGCATTGCTCGAACCGCTGCTCGACACGTTCCTGAGCCCGACGCCAGATCCAGCCCGATCTCAACCGACTCCGCTTCCGTTCACGGACATTACCGTAACGCTGGACGATTTCCTTCCCGAGTCGGCCGGCGATGCATTCGGAATCTTCTGCGCGATGTTCCTCGCCGTTTCTGTGACCAAGGGACTGTGCGACTTCGCTGCCAGCTACCTCGTCAATCACGCCGGCTTCTCCGCCGTGCGCGACATTCGCAACGAAATGTACGAGATTGTTCTGAATCAGTCCCCGGCGTTCTTCCAGAAGAGACACACGGGCGAGTTGATTTCCTCGCTGGTGAGCGACATCGACAGGATCCAGTCGGCCTGCTCTCACTTCCTGGCTGACCTCATGCGGCAGTCGTTCACCGTGGTGGCCCTGCTGTTCGTACTGCTGCGGCACGATCCCTTGCTGACGGCCGGTTGCGTGGTCGTGCTGCCGGTCGTGCTGCTGCCAGCGTCGAGAATCGGCAGGAGGCTCCGTCGGACCTCGACCAGGGCGCAGGGGCACCTAGCTCGGCTCGTAAAGATGATGGAGGAGACCATCTCGGCCAATCGCATCGTCAAGGCATTCGCGATGGAAGGGTTCGAGATTCGGCGCTTCCGCCGCCGGGCGGACCGCCTCTTCGATGCGAGCATGCGCATGGTCAAGCAGCAGGCCGTCGTCTCGCCCATCATCGAAACCCTCGGGGCGGGCATGATCGTCTGCCTCCTGATCTACGTGCGCGGCCGAATTCTGGCCGGCGAGATGACGTCCGGGGAAGTGGTGAGCTTCGTCGTCGCGCTGGCAATGCTGTTGCAGCCCGTCAAGCGCCTGATCGGCATCCACAACATCTTCCAGCAAGCCCTCGGCGCCGTGCAGCGGGCGTTCGAGTACATGGACCACCCGCGCGACGTGAAGAATTCCCCCGGAGCTTCGGTCCTGCCGGGAATCCGGGATTCGATCCAGTTCCACGGCGTCAGTTTCCGCTATCCGGGCAGTTCCGGCGCTCCGGCGCTCCGCGATGTCGATCTGACAGTTCGCGCCCGGGAAGTCGTAGCCCTAGTCGGGCTCAGCGGGGCGGGGAAGACCACGCTCATGAACCTCCTGCCGCGCTTTTTCGACCCCACGGAGGGCGCGATTCGGATCGACGGACGGGACTTGCGGGCGTTCACGGTCGAGTCGCTGCGCAGCCAGATCGCAATCGTGACGCAGGAGACCGTTCTGTTCGACGATTCAGTCTTCAACAATATCGCCTACGGGCGTCCCGACATTGACCCGGAGAGAGTCTACGCCGCCGCCGCATCGGCCTACGCGGCGGAATTCGTCGAGTCCTTGCCGGAAGGCTACGCAACCCGCCTGGGAGAGCGCGGAACCCGCCTGAGCGGAGGCCAGCGCCAGCGTATCGCGATCGCCAGGGCTCTGGTCAAGGACGCGCCCATCCTGCTGCTCGACGAGGCGACCTCGCACCTTGACAGCGAGGCCGAGGCGCTCGTGCAGCGGGCGCTTTCCAACCTGATCCACGGTCGCACGGTGATCGTCAGCGCGCACCGATTCTCGACGATCCGATCGGCGGACCGAATCATGGTGATCGATCAGGGAACGATCGCGGACCGAGGATCCCACGAGTCCCTGCTAGGGAGCTGCGCCCTGTACAGGCGTCTCGTCGACTTGCAGGCGGTCTCGACCGTCAACCACCGATCACTCGACATCCGGCTGCGGTGCCCGCGCGAGGCGGCTTGGCTGGATGCATGCGTTCGGAAGGCCGTCCGCCAAGCCGTTCGGCGCGGCAGCGTGCAGGTGACCATCGAGCTGGACGGCGGCCCGGGCTCCGCTGTCCGCGTCGACAGCGATGTCGTCAGGGCCCGATTGGAAGCGTTCCGCGAGATTGCCGAGCTCTGCGCCGTCCGCGCGCGCCCGGATCCCCACGTGCTGATGAACGTTCCCGGAGCATTGCGGGAAGAACCGAAGCGGTACCAGCGGGAAGACATGGAGTGTCTTGTCGTCGAAGGCATGCAGAGGGCGCTGAGAGCCTTGGACAGCGCTAGGGCGGCGGAGGGACGTGGGTTGATCCGAGACATCAGCGGGCACGCCGACACCATCGAAAAAGAACTCGAAGAGCTGCCGCGTTCCGTCGAGGACGCTGTCGAGGCCAGCCGCGCGAGGCTGCGGCGGCGCTTGCGCACATTGCTGGAGGGCGCTGCCCTCGATCCGCAGAGGCTGGCGCAGGAGGTGGCTGTGCTGGCGTCTCGAGGAGATGCCAGCGAAGAGCTGCAGCGCCTCGGCTCCCACCTGGCCAGCCTGCGACATTGTATTGAGACTGGACATGAAGTTGGGAAGCGGATCGATTTCCTGGCACAAGAGATGAATCGCGAGGCGAACACGCTGCTGTCCAAGGCGCAGCCGCTGGGATCCGGCTCCATCGCGATCACGGAGTCGGGCGTTCGCATTCGCTTGGCGATCGAGAAAATCCGCGAGCAAGCCATGAATCTCGAGTAA

Transcript

ANN40372-RA

Protein

Uniprot

Uniprot term	Description
Q2LVL0	ATP-dependent lipid A-core flippase OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=msbA PE=3 SV=1
Q6AJW3	ATP-dependent lipid A-core flippase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) OX=177439 GN=msbA PE=3 SV=1
Q1LQD3	ATP-dependent lipid A-core flippase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=msbA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08340	DUF1732	Domain of unknown function (DUF1732)	Family	Interproscan
PF03755	YicC_N	YicC-like family, N-terminal region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR013551	Domain	Endoribonuclease YicC-like, C-terminal	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR013527	Domain	Endoribonuclease YicC-like, N-terminal	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034040	Molecular Function	ATPase-coupled lipid transmembrane transporter activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11085	msbA; ATP-binding cassette, subfamily B, bacterial MsbA	EC:7.5.2.6	Transporters	ko02000	deepkoala