Gene detail

Detailed information of ANN40390-RA in Montipora grisea

Genomic Location: Scaffold_7871__1_contigs__length_23901:11440...14624
NR annotation: MYD81324.1, ABC transporter ATP-binding protein [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN40390-RA

ATGATCGCCGTTGCGTTGATCCCGGCTGCACTTATATGGATTACTGGCGATATTCTCAATGGCGTGGCGGCCGCACTTGACCAAAAACTCCCGTGGACAACGGTGCTCGTGCCGGTCGTCGCAATTTTTTTATTGTGGGTGGCGCAGGCGATTTTGAATGCGGTGAGTGGGTTGGTAAACACGATTCTCGGAGAGAGATCGCGAATATTTGCGGACAAGCAACTCATTGAGAAAGCGACGTCTGTCGATTTTGCGTTCTTTGAAAATCCGCGGTTCTACGATCTTCTGCAACACGCCACGCGCAACGCTTATGGTGTCACCGGTCTAGCCATGGCCGCTTTGGCTCTTGCGCAACAACTGCTTACGATCGGATCTATGTTCGCAGTGCTGGCTACATTTTATCCGGCTGGAATAGTGGTGCTATTGGCTACCGCCTTACCCAACGTGTTTATGCAACAGTACTACGCCAAGAAGAGCTACGAACTCGATGCACAGTTAATTCGGAACAATAGGCTTTCGTATTACCACCGATTTTTAGCTACCAATCGTATTAGTGCAAAGGAACTCCGAATCTTCTCTTTGAAGAAATATGTCGTCGATCTCTTTCTTGAGTACCGCAATTTAGCCGCGAATTTGATGATTCAATTGCAGATTCACTTCATGAAATTCCAGCTTGGACTGAATTTGCTAGCACTTATTGGTATTGCAGGAATTTTCGGCTATGCCGTGATAGATGCGGTTGAAGGGCGGCTTGACGTCGGCGACTTGATGAAAGTGTTAATGGCCGCCCAACAGGGTAACTCAGGGTTACAGAACCTCGTGCGGTCCGCTGGGAGGCTGTTCGAAAACACGTTGTTCATCACGCGCTTCTTTCAGTTTCTCGATTTGGATCCGCAGTCGGTTGACGGCGCTTTGGCGCAGGCAACGTGCACAGAGTCAAGGCCGATACCAAAACCCTTGAGCAAAGGTATTGAATTTAAAGATGTCAGTTTCCGTTATCCCGGAAACGATAGACAGGTGCTTGATCGTGTTTCCTTTAACGTTCCCCCCAATACCAAAATTGCTATCGTCGGCGAAAACGGGGCAGGAAAAACGACGATTATCAAATTGCTTTCGCGACTCTACGACCCCACGGAAGGCACGATCTTGCTGGATGGCGTTGACCTGCGCGAATACAAGCTAGAGGAAATACGGAAGACCGTGAGTGTCGTGTTTCAAGACTACATGGAGTACGACTACACAGTTGGCGAAAACATTGGGCTCGGGCAAGTCGATGCCATTGAGGATGTTGATCGAATTGTTTCAACGGCGCAACGCAGCGGCGTTCACGACACCATTGAACGCCTGCCTGACGGCTACGATACGATGCTGGGTAAGGTTTACGATGAAGGCGTGAACTTGTCCGGTGGGGAATGGCAGCACTTAGCAATTTCTCGAGGGCTGATTTCCGACGCGCAGATACTCATTCTCGATGAGCCGACCGCGGCGTTGGATGCGATTCGTGAGCATCAGCTGTACGAACGCTTTGCACAAGCGACAAAAAACCAGACGGTTGTCTTTATTTCCCATCGTTTTTCAACTGTGCGGATGGCTGACATTATCGTAGTCGTTGATAGCGGCCATGTCACGGAAATAGGATCGCACGACGATTTATTAAAGCAAAACGGACAGTATGCAAGGATGTACCTCACGCAAGCGGCCCCGATATGGATGATTGGCAATTTTTGTAAAGGCATACGAAATATAGGAAATACCGAATCAAGCAGCAAATTGTCAATTGATGACAAGTCTGTTCAAGTAAACTTACGGTTTACGGATAATACCAATGGAATAGCGGAAAAGCTACTTGTTGAATTCGTAGTAAATAAGTACGTTAACTCTAAAAAGCCAGACCCCGAATCGGCCACGAATGAATTCTCATTTGACTGTACGATTGATGAATTTAAACAGGTTGGTCGAGCGTTGTCTTATGCATCCGTAGTACCAATGGCGGATGAAATTTCTCAACTAGATGACTATGAGTCCGAGTTATACGATGGCTCGCACTTATACGCCCTTCTTGCGCAGGTTCTTGCTGCATATAAATCCGATTACGGGTATGTTCGGAGCAACGTCGTCGTACCTGCGTTGGAAATTTGGTCGAATGTCTTACGCGTGCTTAGCGACGACCCAATGAGCGTGCGTGATTTTAATCGCAAGGTAGTTGTGGCTACTCGGACGGGAAGGGTTGTTCTCAAGCATTGTGAGGAGCTTGGATGGATTGAGCGGACAAAAGGATATGGCAGCAAACGCGGCGTGGGTGTTTCTCTGACCCAAGCCGGATTGCAGTTCCAGGATTTGGGGAAGAAGAGGATTGCTCAAGTCGAGAGAAACTGGCGTCGAGTGTATGGTGCTGACGTCTACCGAGAACTAAAAGAGAGCTTGTGCCAGATCGTGTCGGCGTTCGCATTGGAATATCCGCATTACGTGACAGGATACGGACCTGCAGATGAATCATTGACTGGCGGTCCGTACCTACCGGCCGAGCCAGGACCGCCGCCGATACCTGGACGAGGGACCGAGTGGCCGGTTGTCATTCGCGAACCGGACCGGAACCTTGTCAGGCTCCCATTATCGGCACTCCTGTCGCAGGCTTTTACGGGCTTTGTCTTGGATTACGAGAGTGCAAACCTAGGTAGGTTAGGGCTTACTTCGACGTTGTTTCTCGATGTTCCCGACGAAGGCGTGGACTATCGTAAAGTGTTAGAGCAAGGTTTCATTACCGGTACCGGCAAATCGTTTCACGAACGGCATTTGAATATTGTGCTTGAGAAACGTAAGTCACACGATGGTTCTCGTATCGTGTACCCGACTCCAAAAACGAAACGAGCACGGGATGCCTTCCATAACTTGAATCGTCGTACCGAGGCAACGTGGCATGATCGGTATGGTAAGGATGTTGTTGTGCGACTTCGGAATGCACTTGAAACGATTGACGCACAAGTGGACGCCAGCTATCCAGCATACCCCAATACAACAGAATGGATGCAACCGTGGATGAATCCATACATCCGTAGCCGGGAGATAAGCGAGTTTTTTGATTAG

Transcript

ANN40390-RA

Protein

Uniprot

Uniprot term	Description
P33116	Subtilin transport ATP-binding protein SpaT OS=Bacillus subtilis OX=1423 GN=spaT PE=3 SV=1
Q5P2S7	ATP-dependent lipid A-core flippase OS=Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1) OX=76114 GN=msbA PE=3 SV=1
Q1QX69	ATP-dependent lipid A-core flippase OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=msbA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43394	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015421	Molecular Function	ABC-type oligopeptide transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06147	ABCB-BAC; ATP-binding cassette, subfamily B, bacterial	-	Transporters	ko02000	deepkoala