Gene detail

Detailed information of ANN40513-RA in Montipora grisea

Genomic Location: Scaffold_8664__1_contigs__length_21920:10529...14570
NR annotation: MXY69780.1, 2-oxoglutarate dehydrogenase E1 component [Acidobacteriia bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN40513-RA

ATGAGATCAACCTCGCGTATGTTGAGCATCTGTACGGACAGTACCAGCGCGACCCAGCGTCCGTCTCGGCCCAATGGCGGAACTATTTCGATTCCGTTACGGCGGGCTCCGACGCCCCCTCGGAACGGCCATCGTCCCCCCGCCGCTGCGCGCGCCGCGCCCGTCGAGCGGCGGTCCGAGCTTTCCGGCTGGACCAGGGCGGACGTAGCAGCATCTTCCGCAGGCCTGCAGCATTGCGTCGACAAGGTGGTGCGCGCCTTCCGCGTGAGAGGGCACATGGTCGCCCGCGTCGACCCGCTCGACATGACAAAGCGGTCGACCAAGGAACTCGATCCGGAGTTCTACGGAATCCTGGCACACCATATGGACCAGCCAATCTCGCCCGAGACGCTGTCCGGATGCTCGCTCAACACGCCCCGCAAGGTGATCGATCGGCTGAGGGAAACCTACACCCGCTCGATCGGCGTGCAATTCATGCACATCGACGACCTCGGTATCCGCGAATGGCTGCAAAAGCGGATGGAACCGCGCGCCAATCACGTTCAACTCAGCCAGGCGCGTCAGTTGAGAATCCTGACCAAGCTCACGGATGCCACGATTCTGGAGGATTTCATCCAGAAGAAGTTCGTGGGGGCCAAGAGCTTCTCGCTGGAAGGCTGCGAGACTCTGATTCCGCTGCTGGACCTGCTCATCGAGCGGGCCGGCCATCACGGCGTCAGGGACGTCGTGATCGGCATGGCCCACCGCGGCCGCCTGAACGTTCTTGCCAATATCATGGGCAAGAACGCCCAGCAGATATTCCGCGAGTTCGAGGACCTGGACCACTCCCACTACGAAGGACGGGGAGACGTCAAGTACCACCTGGGCTACCGAGGCGAATGGCGGACGTCGCACGGCGACTTCGTGCGCACGTCGCTATGCTTCAATCCCAGCCACCTGGAATTCGTCAATTCGGTCGCGATCGGCCGGCTGCGAGCACTCCAAGACCGCAGGGGGGACAGGAAACGGACCAAGGCCCTGTGCATCCTCCTGCACGGGGACGCCGCGTTCGCGGGCGAAGGAATCGTCCAGGAGACGCTCAACATGAGCCAGCTCTCCGGCTACACCGTCGGCGGCACGATTCACATCATCGTCAACAACCAGATCGGATTCACGACCATGCCGCGGCAGGGCAGGTCTAGCATCTACGCTTCGGGCGTCGCCAAGATGCTGCAGATCCCGATCCTTCTGGTGAACGGGGAAGACCCCGAGGCAGCGGCCCAAGCAGTGCGCCTGGCCGTCGATTTTCGCGACGAGTATCGACGGGACGTGGTGATCGACATGTACGGTTACCGGCGGCGGGGGCACAACGAAACCGACGAGCCCCGCTTCACTCAGCCCCTGCTCTATCACGTGATCCAGCAGCGCAAGCCCGTGCGCGAGGGTTACTTGGAGCATCTTCTCAGGCAGGGGGGCGTGACCGTCGACGAGGCCAGCCGCATCGCCGAAGAGCGGCGCGAGCACCTGGAACGCGAACTAGCTGCGGCCCGCAGCGACAGCTACATTCACGTCGGAGACCAGGTCACCGGCGACTGGTCAGGCTACAACAAGGGGTCGGACACGGACGTCGCGGAGGTGGATACCGGCGTCCCGAAGCCGCGGCTGGCATCGATTCTCGAGAAACTGGCGCAAGTCCCCGATGACCTTCGCCTCGACCCGCGCATTCGGCGCCTCATGACGCAGCGGATCGATATGGCCCACGGGAAGCGGCCTCTCGACTGGGCCGCAGTCGAGGCCTTGGCCCTCGGGAGCCTCCTGTTGGGAGGTCACAGAGTGCGGATGACCGGGCAGGACGTGCAGCGCGGGACGTTCTCGCACCGACACGCCGTGGTGTTCGACATGGAGACCGGATTCCCGTACGTCCCGCTGCACCATCTCTCGCCCCGGCAAGGGGAATTCGAAATCCATAACAGCCCGCTGGCCGAATGCGGGCCCCTGGGATTCGAATACGGTTACAGCCTTGAGTGGCCGGACGGCCTCGTGATCTGGGAGGCGCAGTTCGGGGATTTTTTCAATGCGGCCCAAGTGATCTTCGACCAGTTCATCTCCAGCGGCGAGGACAAGTGGCACCTGTGGAGCGGTCTCGTGATGCTGCTGCCCCACGGGCTCGAGGGCCAAGGCCCAGAACACTCCAGCGCCCGGCTGGAGCGCTTCCTGCAGCTCGCCGCCGAAGACAACATCCAGGTCGTCTGCCCGACCACGCCCGCTCAGTACTTCCATGTCCTGCGGCGGCAGATCGTGCGCTCGTGGCGCAAGCCGCTCGTCGTCATGTCGCCCAAGAGCCTGCTGCGCCATCCGGCGGTCGTCTCCGGACTGGATGACCTTGCCAGCGGGAGGTTCGACCGCGTCCTAAGCGATCGGTTCGGCGAGCGGAGCGCCGTGCGACGCGTGCTGGTATGCACGGGAAAGGTCTTCTACGATCTCAAGAAGGCGATCGAATCGGAGACCCGCTCGGACATCGCCATCATCCGCTTGGAGCAACTCTACCCCCTGGATCGAAGAGCGTTTCGCGACGCTTTGGCGCCGTTCGAGAACGCCGAGGTGGTGTGGGTCCAGGAGGAACCCCGCAACATGGGGGCGTGGAGGCATCTCAAGGTGCGCTTTCCGGACGAATTCGAGCGAGCCATCACCAGGCGAGAGTCCGCGAGCCCAGCGACCGGCTCTCCGGGGAGCCACAAGCGCGAGCAGCAACTCAGAATCCCGGAAGCAGGCGAGTCGATTACCGAGGTCCGAGTCGCGGCCTGGAGGAAGTCCGAGGGCGAGACTGTGGCTCTCGACGAGGTGCTGGCCGAGATCGAGACCGACAAGGCGGCGATGGAACTCCCTTCGCCCGCGCGCGGAACGCTCGTCAAGATCCTCAAGGGCGAGGGCGACGACGCGGCCGTCGGCGATGTCATCGGTCTCATCGAGCCTGGCGCTGCCGTAAGATCGCGGGCGACCGAGGCAGCTCGGCCCGAGCGAGGCCGGCCCGTCGTGAGCCCGCAGGGAGGGGAGGAACGCGTTGATGCCAGAGTCATGCCCGCCGCCCGGCGCGTGCTGGGCGAGGCCGGCCTGCCCGCGACCGAGGCCGCCGGAACGGGCCCGGGCGGCCGGGTGCTGAAGGAGGATGCGGTTCGCCTAGTCGAATCCATGGACCGAGGGAACCCGCCCCGGCCGGAACCAAGCGCAACAGACCTGCAGGAACGCGAGAGCCCGCCCGCCTCCGCACGCAGAATACCGGCGGATCCCGGAACCGGCGCGGCACGGCAGGAAGAGACCGTGCCGATGACCCCGATGCGCAGGGTCATCGCGAAAAACCTGGTCGCGGCCCAGCAGAGCGCGGCCCTGCTGACCACCTTCAACGAGGCTGACATGACGGCCATCATCGGCCTGCGGAAGCGGTACGGAGAACTCTTCCAGCAGCGTCATGGCATCAAGCTGGGCTTCATGTCGTTCTTCGTGAAGGCTTCCGTGGACGCGCTGCGAGCCGTGCCGGCGGTGAACGCCCGCATCGAGGGCAGCAGCATCGTGTATCGCCAGTACCAAGACATCGGCGTCGCGATCGGGGGCGGCCGCGGCCTCGTGGTGCCGGTCCTGCGCGACGCCGAGACGATGAGCTTCGCCGGAATCGAGCGGCGGATCTCCGATTTCGCCGCACGCGCCCGCGATAACAGGATCGAGCTCTCCGAACTGCAGGGGGGGACGTTCACTATCTCCAACGGCGGGATCTACGGCTCCATGCTGTCCACCCCGATCGTCAATCCCCCGCAGAGCGGCATTCTGGGAATGCATGCCGTTCAGGACCGGCCGGTCGCCATCGGCGGCAGGGTCGAAGTCCGGCCGATGATGTATCTGGCCCTGACTTACGACCACCGCATAGTGGACGGTCGCGAGGCGGTGACTTTCCTCAAGCGGATCAAGGACCTTGTAGAGACACCCGAGCGGATCTGGCTCCGGGTCTGA

Transcript

ANN40513-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q72PJ7	2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=sucA PE=3 SV=1
Q8F6S7	2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=sucA PE=3 SV=1
A5VSQ0	2-oxoglutarate dehydrogenase E1 component OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) OX=444178 GN=sucA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00198 all species →	2-oxoacid_dh	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	Domain	Interproscan
PF00676 all species →	E1_dh	Dehydrogenase E1 component	Family	Interproscan
PF00364 all species →	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02817 all species →	E3_binding	e3 binding domain	Family	Interproscan
PF16870 all species →	OxoGdeHyase_C	2-oxoglutarate dehydrogenase C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR001078 all species →	Domain	2-oxoacid dehydrogenase acyltransferase, catalytic domain	Interproscan
IPR001017 all species →	Domain	Dehydrogenase, E1 component	Interproscan
IPR006255 all species →	Family	Dihydrolipoamide succinyltransferase	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR036625 all species →	Homologous_superfamily	E3-binding domain superfamily	Interproscan
IPR011603 all species →	Family	2-oxoglutarate dehydrogenase E1 component	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR004167 all species →	Domain	Peripheral subunit-binding domain	Interproscan
IPR031717 all species →	Domain	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal	Interproscan
IPR042179 all species →	Homologous_superfamily	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily	Interproscan
IPR003016 all species →	Binding_site	2-oxo acid dehydrogenase, lipoyl-binding site	Interproscan
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23152 all species →	2-OXOGLUTARATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0016624 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Interproscan
GO:0004149 all species →	Molecular Function	dihydrolipoyllysine-residue succinyltransferase activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0045252 all species →	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan
GO:0004591 all species →	Molecular Function	oxoglutarate dehydrogenase (succinyl-transferring) activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN40513-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.