Gene detail

Detailed information of ANN40563-RA in Montipora grisea

Genomic Location: Scaffold_3495__1_contigs__length_36101:9194...11235
NR annotation: MYF62998.1, GTPase ObgE [Rhodothermaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN40563-RA

ATGCGTTTTGTAGATCATGTGAACATTCATGTGCGCAGCGGCAAAGGCGGTCCAGGTTGCGTTGCATTCAGGCGGGAAAAGCATGTGCCGCGGGGAGGGCCCAGTGGGGGAGATGGTGGCCGTGGTGGATCCGTACTGATTCGCGCGGATCCTCACCTGCGAACCTTGCTTGACCTTCGGTACCAAAAGCATCAGTTTGCATCCTCAGGCAAGACAGGTGGTGGTAGTCATAAAGCGGGGAAGGATGGCGATGATCTCGTACTGCGTGTGCCGTGCGGTACGGTGGCCAAGATTACGGAAACTGGAGCATTGATAGGTGAAGTCGTGCAACCGAACAGCGAACTTCTGTTAGTGGCCGGAGGGCGTGGTGGCAGGGGGAACGCTCAATTCAAGGGCCCATCGCACCAGATTCCGCGCTATGCACAGCCGGGCGAGCCGGGCGAAGAAGTAAGGGTTACGCTGGAGCTAAAGATGTTGGCTGATGTCGGGCTGGTCGGATTTCCCAATGCAGGCAAGAGTACATTAGTGGCTTCATTATCGGCTGCACGTCCCAAGATAGCTGCCTATCCCTTTACCACACTCGTCCCGGTGCCGGGCGTTGTTCGCGTAGGAAACTACCAGTCATTCGTAATGGCTGATATTCCTGGCATAATTCAAGGCGCCAGTACGGGGAAAGGGCTTGGACTACGTTTCTTGAGACATATTGAACGCAATGCCGTGTTGTTAATTCTAATTCCAGTTAACAGTAGGGATCCGGCTGCCGAATATGATCTGCTTATGCAAGAACTCGCAGCTTATGGTCCTGAGCTGGCTCAAAAACCACACTTGATAGCCTTTTCCAAGGCAGATCTAGTGCCCTCGGCTGATCACGCGTCCTGGATGGCTTCGGTCAGGAACACCTTCGATCCTAGTCTAACGCTGATGCTAATCAGTGCTGTAGCCGCACAGGGATTGGAGCCGCTCAAGCGAACTCTCGTAGTGGAATCTTATCGAAAAACGCTACGCGTGGACACGGGTGAAGTGCGGCGCCTGGATGTGTATCTGACACAGGTGCTACCTGAAACGTCCCGAAACCAGATACAGCGGGCGATCACGGCGGGTCGAGTATTCGTCAATGGACAGTGTGTGCGTCGGGTCTCCCAACGTGTGGTCGCTGGCGACATAGTCACAATGCAGGTACTTGCGGCACCCCCCATAACCTTGATCCCCGAGCCGTTTCCGCTTGACATTGTGTATGAAGATGCATGCATGCTAGTAGTAAACAAACCAGCGGGTATGGCTGTGCATCCAGGAGCCGGGCGAAATTCAGGAACCCTGGTCAATGCACTACTGCATCATGTGGGCGACCCCCTTTTGGCGCTGCAGCAGGCAACGCAGATACATAATCGCGGGGATAATGAACAGCATATATCACTCCGCCCCGGCATCGTGCATCGCCTTGACATGAATACCACAGGGCTTCTAGTGGTGGCCAAAGATGAGCAGTCCCAAAATGCACTGCAATGGCAATTCAGGGAACGAACAGTCAAACGCATCTATGTTGGTATCGTATGGGGGGTACCGGATCCTCTGGAAGGCAAAATCGACGCTCCCATTGGGCGCAGCCCAAGAGATCGGAAGAAGATGACAGTGCTTAGCAGTGGGCGAAGGGCCGTGACGCTTTATCGGACCGTGAAGTCGTTTGGAGCGACTGCGATGGTTCATTTTCGACTTCGGACCGGTCGCACCCATCAGATTCGCGCACATTCCCGCCACATAGGCCATTCAGTATTGGGAGATCAAGTCTACGGTGGGGCGACCATCCGCGTAGGTCCTCGGACGGCGCGCCGCCGCCGTTTTTTTGCCAATCTGTTTAGTGTGATGCCACGGCAGGCACTACATGCTCAAACGCTGGGATTCCTTCACCCGAGTTCTGGTGCAGCCATGCAGTGGGAATCGAAGCTTCCACCAGACATGGATCATGTGCTGAAGCAACTGTGTAGGGATCCTGGGTATCCTCCAGCAGAGTAG

Transcript

ANN40563-RA

Protein

Uniprot

Uniprot term	Description
Q8KAF0	GTPase Obg OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=obg PE=3 SV=1
B2RIY7	GTPase Obg OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) OX=431947 GN=obg PE=3 SV=1
Q7MW55	GTPase Obg OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=obg PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan
PF01018	GTP1_OBG	GTP1/OBG	Domain	Interproscan
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF01479	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR036726	Homologous_superfamily	GTP1/OBG domain superfamily	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR031167	Domain	OBG-type guanine nucleotide-binding (G) domain	Interproscan
IPR045086	Family	OBG-type GTPase	Interproscan
IPR006169	Domain	GTP1/OBG domain	Interproscan
IPR014100	Family	GTP-binding protein Obg/CgtA	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR006074	Conserved_site	GTP1/OBG, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11702	DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0000287	Molecular Function	magnesium ion binding	Interproscan