Gene detail

Detailed information of ANN40621-RA in Montipora grisea

Genomic Location: Scaffold_3155__1_contigs__length_37942:7151...9579
NR annotation: MXY86673.1, DEAD/DEAH box helicase [Chloroflexota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN40621-RA

ATGCACGATCGTGGAGCCGGCGTAATCCATAAACCCGGTCTCGCCCAGCCCGCTCAGCCAGCCGCCGCCCCACGTCCAATTGACCACGATCGGATAAATCAGGCCGGTGATAAAGACGGTGTAGAACAGGTAGGCGCTGAACTTCGTACGCTCGGCCAGCGCGCCCGAGACGATCGTCGCCGCCGTCGCCGCGAACGCCCACTGGAAAAAGAACACCGCCGCTTCCGAGACGCCGCCGTCCAAGACGTCGCCGGTCTCGGTCAGCCCGCCCAGCGCCGGAAAGAACGAGTGCCCGCCGATGAAGCCGCCTTGCGAGGCGCCGAAGGCGAAGCCGAAGCCGATCGCCCACCAGACCACCGCGCCCAGCGACGCGTCGAGCACGTTCTTCATCAGAATGTTCGTCGTGTTCTTCACCCGCACGAATTCTTCACCCGCACGAAGCCGGCCTCCAACAAGCCGAACCCCGCCTGCATGAAGAACACCAGAATCCCGGCGACGACGTACCAGATCGTGTTCACCGCCAGAATCAGATCGACGACCTCCGCCGATACTTCCTGGCCGTGGACGATCCCCAGCGTCGCCAGCAGCCCGCTGCCCAGCCCCAGCGCGATCCCCAGGCCCGGCTTGCGCGCTCCGCGCCAGCGCTTGGGCGGACGCGCCCCCGCCGCCGGCCCGGGGCGCTGGACGATTCGAGCAAGTGTCATACGGGTTCCTCCTAATCTGCTGATTCGGCCGCTTGCCGAACCTCACAGAAAAACGTATGCAGCATTCCCCCCGCGCAGGTTTCACAGCGTTTACCAGCAGACGCTCTTGTCCTTTTTTCGACGCTTCCTCTCCAACTCCGCTCCCGCCGCCGCCGACAACACCGCCGCCGAACCCGCCAACCGACCTGAACCTGAAACATCCGCGCCCGCGCCGGCCGCGCGCCCGCGCCGACGGCGGCGGCCCCGCTCGGAACGCAGCGAACGGCGCCCGCCGGCCGCCGCGCCGCCTCCAGCCGACGCCAACACCGACACCGGCGCCCGCCCCAAACGCCGACGCCAGCGCAAACGCAGCCGCGCCGCCTCTGCGCCGTCTCAACAACCCCGCGGCCCCAAGTCCGCCGCCCGGCAAGCCCTGCTCAGCGGCGGCTACCGCCTGCCCCCGCTCGACCGCCTGCGCGAAATCTCCCCCGAGCAGTTCCCCCCCGCCTTCACCCGCCTCGGCCTCTCCGAGCAAACCCTCGCCGCCCTCACCGCCCTCACATTCTCCGAACCGACCCCGATCCAGGAAGAAACGATCCCGCTCCTGCTGCAAGGCCGCGACATCGTCGGCCAAGCCCAGACCGGCACCGGCAAAACGATCGCCTTCGGCGCGCCCGCGGTCGACTGCTGCGACCCCGACTCGCCCGACGTCCAAGCCCTGATCCTCACCCCCACGCGCGAACTCGCCCAACAGATCGGCGCCGTGCTCGACTTCCTCGCCCGCGCCCGCAAACTCGAAGCCGTCGTCCTGATGGGCGGACGCCGCCTCGACGATGACTTCGCCAACCTCGAACGCCGCCCTCAAATCGTCGTCGGCACCCCCGGCCGCGTGATCGATCACATCCAACGCCGCACCCTCCAACTCCAACACGTCCGCTTCGCCGTCCTCGACGAAGCCGACCGCATGCTCGATATCGGCTTCGAACCCGACATGCGCCGCATCCTCCGCCACTGCCCCCAAGACCGCCAGACCGCCCTCTTCTCCGCCACCATCCTCATCCACCGCTACATGCGCCAGCCGCAGCACATCCAAATCGACCCCGAAACCGCCGCCGCTGAAGGCATCGCCCAGACCTACTACGAAATCGCCAACCGCGACAAACTCCGCGCCGTCGACGAACTCCTGCCCCAACTCGATAACCGCACCCTCGTCTTCTGCAATATGAAAGTCACCGTCGACCGCCTCGTCGACCGCCTCCGGCGCAAGGGCTTCAACGCCGACGCGATCCACGGCGACCGCCAGCAGCGCAAACGCGACCGCGTCATGCAGCAGTTCCGCGCCGGCCAGATCGACTTCCTCGTCGCAACCGACGTCGCCGCCCGCGGGATCGACATCCCCGACGTCCAGCACGTCCTCAACTACGACCTCCCCCAAACCGCCGAGGATTACGTCCACCGCATCGGACGCACCGGCCGCGCCGGCAAGCAAGGCGCCGCGATCAGCTTCGTCGGCGAATGGGACCTCGAGCCGCTCGACAAAATTCTCGCCCTCGTCGGCGACGACCTCCAGCGCGGCGAACTCAGCGTCTACCGCTAG

Transcript

ANN40621-RA

Protein

Uniprot

Uniprot term	Description
Q73EU1	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=cshA PE=3 SV=1
Q5L3G9	DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA PE=3 SV=1
A0R8U6	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan