Gene detail

Detailed information of ANN40858-RA in Montipora grisea

Genomic Location: Scaffold_8412__1_contigs__length_22577:2281...4296
NR annotation: MYN66739.1, 3-hydroxyacyl-CoA dehydrogenase [Acidobacteriota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN40858-RA

ATGCGCGCCGCGCTGGGCGACCGGGTCATGGAAGCGCTGGCCGACGACGCCGTCGCCGCCATCGTCGTCGCGGGCGCCGGCCGGATGTTCTGCGGCGGCGCCGACATCCGCGAGTTCGATGCGCCGCCGCCCCCCGGCGCGGCGTCCCTCCCGGCGGTGCTCGCCGACATGGAGGCGTCGCGCAAGCCGGTGGTCGCGGCGATCCACGGCGTCGCCGCCGGCGGCGGGCTCGAGGTGGCGCTCGCGTGCCACCTTCGGATCGCCGCGCCGGGCACGCGGCTCGGCCTGCCGGAAGTGACCCTGGGGATCGTCCCGGGCGCGGGCGGTACGCAGCGCCTGCCCCGGCTCATCGGCGTCGAGGCGGCGCTCGACGTCATCGTCGGCGGTCGGCTCCTGCCGGCCGAGCGCGCGCTGGCCCTGGGCATCGTCGACCACCTCGCGGGAGGCGATCTGCTGGCAGCGGCCATCGCGCGCGCCCGGCAGCTCGCGACCGACGGTGCGCCGCTGCGCCGTGCGTCGACACTCGACGAGCGGGTTGCCGATGCCCGGGCGCGGCCCGAAATCTTCGCTGCGTTCCGCACGCGGTTGGCCCGGCGCGCCCGCGGATTCGACGCGCCCCAGGCCTGCGTCGAGTGCGTCGAGCACGCCGTGGCGCTCCCCTTCGCGGAGGGAATGGCCGCGGAGCGCCGGACCTTCGAGCGGCTGCGCGCCTCCGACCAGTCGCGGGCGCAGCGCCATGCCTTCTTCGCCGAGCGCGAGGCGGCGAAGATCCCGGACGTGGCCCGGGACACGCCGGCGATGCCGATCGCAAGCGCCGCGGTGATCGGCTGCGGGACCATGGGCGGAGGCATCGCCATGACGTTCGCGAACGCCGGCATCCCGGTCACCGTCGTCGACGTCTCGGAGGAAGCGCTCGACAAGGGACTCGCGATCGTCGCGCGGAACTACGCGGCCACGGTCTCGAAGGGCCGCCTCTCCCAGGCGGAGATGGACGCGCGGCTGGCACGCATCGCGCGCAGCGTGCGTTACGAGGAGGCGGCAGGCGCCGACATCGTCGTCGAGGCGGTCTTCGAGCGGATGGATCTGAAACGGGAAGTGTTCCGCCGGCTCGACGCCGTGTGCAAACCGGATGCCGTGCTGGCCACGAACACGTCGACGCTGGACGTTGACGTGCTGGCGGCGGCCACCTCCCGGCCGGGTTCGGTGATCGGCACCCACTTCTTCAGCCCGGCCAACGTGATGCGGCTGATGGAGAACGTGCGCGGCACGCGCAGCTCGGCGCGCACGATTGCCACCGTCATGCAGCTCGCGAAGCGACTCGGCAAGGTGGGCGTGCTGGTCGGCGTCTGCGACGGCTTCGTGGGCAACCGGATGCTGGCCCCCTATCTGCGGGAGGCGGAGTTCCTGCTCGAAGAGGGCGCGCTGCCCCAGCAGGTGGACCGGGTCATCCGCGAGTTCGGGTTCCCGATGGGACCGTTCCAGATGTCCGACCTCGCGGGCAACGACGTGAGCTGGTTCATCCGCCGCCGGCAGGCGGCCACCCGGCCGGCCCACCTGCGCTACTCCCCCGTCGCGGATCGCATCTGCGAGCGGGGCCGGTTCGGGCAGAAGACCGGCGCCGGATGGTACCGCTACGAGCCGGGCAGTCGCACGCCGGTGCCGGACCCGGTGGTCGAGGAGCTGATTGCCGCGGCGGCGGCGGAGAGCGGCATGGACCGCCGCACCGTCAGCGACGACGAGATCGTGCCGCGCTGCCTGTATCCACTCGTCAGCGAGGGAGCGCAGATCCTCGACGAGGGAATCGCCCTGCGCGCCGGCGACATCGACGTGGTGTGGATGCACGGTTACGGTTTCCCGCGTTACCGCGGCGGGCCGATGTTCTGGGCCGACCGGGTGGGTCTCCGCACCATCTACGACACGCTGAGCCGCCTGCACGACGCGCACGGTGCGTGGCTCGAGCCCGCCCCGCTTCTCAGGCGGCTCGCCGAGCAGGGCAGGGGGTTCGGGGCCGCGTGA

Transcript

ANN40858-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NYL3	Peroxisomal bifunctional enzyme OS=Danio rerio OX=7955 GN=ehhadh PE=2 SV=1
Q9DBM2	Peroxisomal bifunctional enzyme OS=Mus musculus OX=10090 GN=Ehhadh PE=1 SV=4
Q08426	Peroxisomal bifunctional enzyme OS=Homo sapiens OX=9606 GN=EHHADH PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003582 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00725 all species →	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00378 all species →	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006108 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR018376 all species →	Conserved_site	Enoyl-CoA hydratase/isomerase, conserved site	Interproscan
IPR001753 all species →	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23309 all species →	3-HYDROXYACYL-COA DEHYROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan
GO:0003857 all species →	Molecular Function	3-hydroxyacyl-CoA dehydrogenase activity	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07516	fadN; 3-hydroxyacyl-CoA dehydrogenase	EC:1.1.1.35	Benzoate degradation	ko00362	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.