Genomic Location: Scaffold_3527__1_contigs__length_35930:29005...30324
NR annotation: MXX92510.1, ribosome biogenesis GTPase Der [Chloroflexota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN40908-RA |
| Transcript |
| ANN40908-RA |
| Protein |
| ANN40908-RA |
| UniProt accession | Description |
|---|---|
| C5D3F4 | GTPase Der OS=Geobacillus sp. (strain WCH70) OX=471223 GN=der PE=3 SV=1 |
| Q9KCD4 | GTPase Der OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=der PE=3 SV=1 |
| Q65I15 | GTPase Der OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=der PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012271 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01926 all species → | MMR_HSR1 | 50S ribosome-binding GTPase | Family | Interproscan |
| PF14714 all species → | KH_dom-like | KH-domain-like of EngA bacterial GTPase enzymes, C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR031166 all species → | Domain | EngA-type guanine nucleotide-binding (G) domain | Interproscan |
| IPR006073 all species → | Domain | GTP binding domain | Interproscan |
| IPR016484 all species → | Family | GTPase Der | Interproscan |
| IPR032859 all species → | Domain | GTPase Der, C-terminal KH-domain-like | Interproscan |
| IPR005225 all species → | Domain | Small GTP-binding protein domain | Interproscan |
| IPR015946 all species → | Homologous_superfamily | K homology domain-like, alpha/beta | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43834 all species → | GTPASE DER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000027 all species → | Biological Process | ribosomal large subunit assembly | Interproscan |
| GO:0043022 all species → | Molecular Function | ribosome binding | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03977 | engA, der; GTPase | - | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
