Gene detail

Detailed information of ANN40960-RA in Montipora grisea

Genomic Location: Scaffold_8859__1_contigs__length_21386:13468...15981
NR annotation: XP_035034584.1, tripartite motif-containing protein 2 isoform X3 [Hippoglossus stenolepis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN40960-RA

ATGGCCACACCTTATTCCTCCGGAGCAACGACTCAAAGAAGTATTGAAATGGCAGATGTAGGAGGAAAACAGAGGGGGAGCGTTAGCGGTAATACGTTGAGATTACAGAGAGTCCAGGAAGAACTAATCTGCGCGATATGTTTGGACTTTCTCGAGGAGCCGAAACTGCTCCAATGTGCGCACTCTTTCTGCAAAAAGTGTCTAACGGAGCTTCTGGCTGTACCCGAAGAAGCCCCTGAAACTGGCGTCGAGGCCGAGGCAGTAGACAGACACGTACAGTGCCCGAGCTGTCGTGATATTACTCCAGTGCCTCGCGCAGACCTCGCCGAGTTAAAGACAAACTTCATGCTGGCGAATATGGTAGAGATAGTCTCCGAGGAAGACAAGGCCGAGCTTCGGAAGACACTGAGCGTGCGCAAGAACCCACCTCCGATCGAGACGTGGCAGTTACCAATGTGCAGCCAGCACCTAAAGCCGCAGGAGTACTACTGCACCGAATGCAACGAGCTTCTCTGTAAAAGGTGCATGATCAATCAACATAGAGACCACGAGTTTGACGAAGTTGAAGCGGTCCTCTGGAATCGAATTACCGCTCTACGGAGTCTCGTTCAACCAGCCTGGGAAGCCGCCTCTAGAGCTAGCGACCTGGGGAAAGAAATCACTGCCCAGCGCGACGCGATCGAAACGAACTCTGTAAAGGTGGCAGACGATGTCAAAACGTTCTTCGAACGCCTCAGGCGCGAATTTGACGAGCGGGAGGAGCAACTACTGGGTAGGGTGAAAGACTATACAAGCGGTAAGCTGAGCATGCTGACTTTGTGGGAAGAGAAGCTAGCAGAAGACCGTTCGCTGATCTTGGATACCATCCAGGAAATTGACGCGCTTATAGAACGCAATGGTGACGTCTCTGCCATTGCGCAAACGCACGAGATCGCAGAAACGCTAAATAAGCGCCAACGTTCCATACTCACGCTCTCGGAGTCACTGTTACAGCACGGCCGGTCCGTCACCCTATTAGACTTCCACCCTAGTCATACGCTTGACATTTCTATTAGCAATCTGGGCACACTTCAGGAGCAAGCTAGTGATGGCTTGCAACCTGCTACACGTATACTGGAGGGAAGAAGAACTGAAACCGAGATCTTTCAAACAAGAGATGGCGAACCTGTAGTAACACAACAAGGAGAGGATGGTAGAGCAGGAATGCCTCGATCATCAGCAGGCGGCCAAGTCGGTAACGAAGATCAAATGTTAACAGAAGAGCCAGGAGTACCCTTTAAGCAAGAATTCTCCGCCACTGACTTTGACTCCTCGCTCCTTGGTTGTCATACACATAAACAGCTCTCCACCAGTTGTAGTGTTCCAAACCTTAGCAGTACCAGTCAGGAGCTGCCACCATTGCCTCGACCACGCTGTTCACGAGTCGCTAGAAATACTCTTCCAGTGCGAAAGAGGTCACAGAAATCACCACGGAAGAACTCAGAACTTGTCCTACCTGCTGTGTATGGTGGAACTTCCTTATCCTTTTCCCCCTCATTTCTTCCATATGGCAGACAAGAAACCGATGAAGGGACAGGATTATCACCTACTACTCCTGAGCATGGTGGCTTAAGTATGCTCCTAGAGCAGTACATAGCACAAGTGGAGCCTCCAATCATGATCTTCCCCCAGCAGTCTTCAAGTCATGGTGCAGACATCCAACCAATGGGCATTGCGATCGGTCAAGGCAATTCCATCATCATTAGTGACCTTCAAACCAACTCCCTAAAGGTGATTGCAAGTAGTGGAAGGATTGTTGACACTCTTGGAAGTGAAGGGAGAGATACTGGGCAGTTTCGTAGGCCTTCAGCTATAACGGTAGACCCTTCAGCTGATGGAACCATCTATGTTGCTGACAATGGAAACAATCGAGTCCAGAAGTTCTCCAAAGGGACGTTCTCAGCACGATTCTGGCAGAAAACAAGGGAGAGGCAGCTAGGTGACCTCTGGGGGGTAGCGGCAACAAACGGGAAGGTCTATGCATGTGACTGGCAGAACCACTGTGTCCACACATTTGACAGCCAGGGTAAATACCTCAGTCGCCTGGGAACAGACTTCCTCAAGCTACCGGTGGGTATTGCTGTCAACAGTTTTGGCCATCTATTGGTTGCAGATGGAGAATACCATTGTATCTGGGAGCTGAGCCCCGAGGGGCAAATGCTGAAGCAGATTGGCCAGAAAGGGAGTGGTCCTGGACAGTTGAACCTCCCTTATGGTGTTGCCATTCATCCAGATGGACTTGTGATTGTTACTGAGAGTGGAAATTCACGTGTGTCTGTCTTCTCACAGGTGGGAGACTTCATTGCATGTTTTGGTGGCAGGGGAACCCAACCGGGAGAGTTCAACCATCCCACGCATGTGTGTGTGAACTCGAGAGGACATGTGATCGTTGCTGATGAACAGAACCATCGAATTCAAGTGTTTGATATTACTTCTGTTATTTCTAATGTGGATATATCATGTCATGATAACTAG

Transcript

ANN40960-RA

Protein

Uniprot

Gene family

Uniprot term	Description
Q503I2	Tripartite motif-containing 13 OS=Danio rerio OX=7955 GN=trim13 PE=2 SV=1
O75382	Tripartite motif-containing protein 3 OS=Homo sapiens OX=9606 GN=TRIM3 PE=1 SV=2
Q9BZY9	E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens OX=9606 GN=TRIM31 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan