Genomic Location: Scaffold_4749__1_contigs__length_31244:21462...22412
NR annotation: WP_031434062.1, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD [Methylomarinum vadi]
| CDS | |||||
| ANN40969-RA | |||||
| Transcript |
| ANN40969-RA |
| Protein |
| ANN40969-RA |
| Uniprot term | Description |
|---|---|
| Q8P682 | Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rluD PE=3 SV=1 |
| Q8PHN2 | Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=rluD PE=3 SV=1 |
| P33640 | Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rluD PE=3 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00849 | PseudoU_synth_2 | RNA pseudouridylate synthase | Family | Interproscan |
| PF01479 | S4 | S4 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006224 | Conserved_site | Pseudouridine synthase, RluA-like, conserved site | Interproscan |
| IPR036986 | Homologous_superfamily | RNA-binding S4 domain superfamily | Interproscan |
| IPR002942 | Domain | RNA-binding S4 domain | Interproscan |
| IPR006145 | Domain | Pseudouridine synthase, RsuA/RluA-like | Interproscan |
| IPR050188 | Family | RluA Pseudouridine Synthase | Interproscan |
| IPR020103 | Homologous_superfamily | Pseudouridine synthase, catalytic domain superfamily | Interproscan |
| IPR006225 | Family | Pseudouridine synthase, RluC/RluD | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21600 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0009451 | Biological Process | RNA modification | Interproscan |
| GO:0009982 | Molecular Function | pseudouridine synthase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06180 | rluD; 23S rRNA pseudouridine1911/1915/1917 synthase | EC:5.4.99.23 | Ribosome biogenesis | ko03009 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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