Genomic Location: Scaffold_5566__1_contigs__length_29119:2825...4231
NR annotation: MCG8418085.1, sigma-54 dependent transcriptional regulator [Pseudomonadota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN41179-RA |
| Transcript |
| ANN41179-RA |
| Protein |
| ANN41179-RA |
| UniProt accession | Description |
|---|---|
| Q88RJ6 | Alginate biosynthesis transcriptional regulatory protein AlgB OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=algB PE=3 SV=1 |
| Q00934 | Response regulator protein PilR OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=pilR PE=1 SV=2 |
| P13632 | C4-dicarboxylate transport transcriptional regulatory protein DctD OS=Rhizobium meliloti (strain 1021) OX=266834 GN=dctD PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006593 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00158 all species → | Sigma54_activat | Sigma-54 interaction domain | Domain | Interproscan |
| PF02954 all species → | HTH_8 | Bacterial regulatory protein, Fis family | Domain | Interproscan |
| PF00072 all species → | Response_reg | Response regulator receiver domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR002078 all species → | Domain | RNA polymerase sigma factor 54 interaction domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR002197 all species → | Domain | DNA binding HTH domain, Fis-type | Interproscan |
| IPR025943 all species → | Binding_site | Sigma-54 interaction domain, ATP-binding site 2 | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR011006 all species → | Homologous_superfamily | CheY-like superfamily | Interproscan |
| IPR001789 all species → | Domain | Signal transduction response regulator, receiver domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32071 all species → | TRANSCRIPTIONAL REGULATORY PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0008134 all species → | Molecular Function | transcription factor binding | Interproscan |
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0000160 all species → | Biological Process | phosphorelay signal transduction system | Interproscan |
ANN41179-RA.
