Gene detail

Detailed information of ANN41444-RA in Montipora grisea

Genomic Location: Scaffold_1042__1_contigs__length_63803:58084...60177
NR annotation: XP_011403663.1, PREDICTED: TNF receptor-associated factor 5-like [Amphimedon queenslandica]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN41444-RA

ATGGCTACTGCACCTGATCCAGACGACTATGATACTGTTAGAAAAAAGCCTTGTAAGTTCGCAGAGTCTGACGAGGACGAAGACCCAGCTGATGAAAATCCAGCGCCCTTGCCTGTGGTTCGGAAACGGCCTCCACTGAACTGGCGAGTGGGATACGAGTGCGAGTTCTTGGACGGTCCTCCCGAGGTCATTCAGTTCGAGTGTCCAGTGTGTATGCTCGTCCTACGGCAACCCTACCAGGCCGACTGCTGTGGCTACAGTTTCTGTCGAACTTGCCTCGAGGTGATCGAATCGAAAAACAACCCGTGTCCCACCTGCAACAAACCCTTCACCTCATTTCCAGACAAGCGTCTTCAACGATCTCTCTACTCCCTCCGCGTCACCTGCGAGCACAAGAAGGAAGGATGTCTATGGAAAGGAGAGCTGGGAGTGTTAGATAAGCACCTTAATGAAATTCCCAGGGATGGCGAGCAATTGTATGGCTGTGAGTTTGTAAAGATTCCGTGCAGAGAGTGTCAAGAGCCAATTGAACGTCGAAACCTACAGTCTCACGAGATTGAATCTTGTCTTAATCGGCCCTACAGCTGTGACTACTGTGGGCAGTACTGCTCAACCTATGAGGATGTAGTCAAGAAACACTGGCAGGTGTGTGGTTTTTACTCAGTTCCTTGTCCAAACAACTGTGGTATTTACCCCGAACGTCAAAACTTGAAGATCCATGTGACCAATGACTGTGCACTTGTGGCTGTCAACTGTGACTTTCACTATGCCGGGTGTGAGGTCAAGATTCAACGACGGAACATGAGGCAGCACTTGGAAGAGTACATACTCCAACATGTAGGCCTAATTGGTTCATACAGTCAGAGAATCACTGAACAACTTCAGGAGAAAGATGGTCTCGTAAGACAACTCGAGAATGAGCTGGAAGAACAGAAACAAAAGGTCGAAGAACTTGGAGTGAGTAACTACAAACTATGGGAATTGAGTGAGGACATCGCCATGCCCGGAGCGAAAGTAGAGACCTTAGAGCAACAGGTTGCTACAATCCACGAGTGCCTACAAGAGCATACATCCTCGATACGAGCATTGGAACAGTACACGCCTCAGTTCCCAATTGAGTTTACCATGACTGAATTTGAGCGACACAAACAAAGGGAGATTGAGTGGTATAGTGAGCCATTTTTCACCCACCCTCATGGATACAAACTATGCCTAAAAGTCGATGCAAATGGATATGAGAAGGGTAGGAGCACACATGTATCACTGACTCTTTTTCTGATGAAGGGTAGGTTCGACCAACACCTTGTTTGGCCATTCGAGCGGGCTGTATCCATTCGTGTCATAAACCAGCTTGGTGATGCAGAGCATCATGACTACACATTCCACCTCATGGCTGCTAAAGATCCTGTCATCATCCAGCGTGTCTTCTTTGGGGAATTGGCTGGCAAGGGCTGGGGTGAAGCGGAATTCCTTGCTCATGACAAGCTAGGCCATGACGTTGACAAGAACAGGCAGTATCTGAAGAATGACTGCCTTCGTTTCCAAGTGACAAAGGTCACCATACTTGACCGCATTGCCCAGCTTGAGAGAAAATGTCTGTCAATCGAGTCTCGGGTCTGCATAGTACCGTTCATGTTCTCAATGCGTAACTATCAGCAGCTAAAAGATGAGGACAGTGCATACTACTCCCCGTCATTCTATACTCATCAAAATGGCTACAGGCTCTGCCTGAGGGTTGTGCCAAATGGCGTCGGTGAGGCCCAGGGAACACATGTGTCTGTGTTTGTCCAGCTGATGCAAGGAGAATTTGACAATAGTCTCAAGTGGCCATTCAGAGCACTGGTTGTGATCCAACTTCTTAACCAACTTGAGGACAGGGATCATGTCACCGAGGCTATCAACATCACACAGGATGATACCGACCCCTTGCTGAGATCTACTGGACAAGCTACAGTCGGTGATAGGGCCGTGTCGTTAGGTAAGGCACAATTCATGCCCATGGAAGAACTGGACTATGACCCTATCAGAAACTGTCAGTACCTCATGAATGACTCACTCTCTTTCAAAGTGCAGAAAATTAAAATGAAGAAATAG

Transcript

ANN41444-RA

Protein

Uniprot

Uniprot term	Description
B6CJY4	TNF receptor-associated factor 6 OS=Cercocebus atys OX=9531 GN=TRAF6 PE=2 SV=1
B6CJY5	TNF receptor-associated factor 6 OS=Macaca mulatta OX=9544 GN=TRAF6 PE=2 SV=1
P70196	TNF receptor-associated factor 6 OS=Mus musculus OX=10090 GN=Traf6 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09848	TRAF4; TNF receptor-associated factor 4	-	Small cell lung cancer	ko05222	deepkoala