Genomic Location: Scaffold_1578__1_contigs__length_53003:7710...9407
NR annotation: MCE2558377.1, transcription-repair coupling factor [Acidobacteriota bacterium]
| CDS | |||||
| ANN41513-RA | |||||
| Transcript |
| ANN41513-RA |
| Protein |
| ANN41513-RA |
| Uniprot term | Description |
|---|---|
| P37474 | Transcription-repair-coupling factor OS=Bacillus subtilis (strain 168) OX=224308 GN=mfd PE=3 SV=1 |
| Q5HRQ2 | Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=mfd PE=3 SV=1 |
| Q4L3G0 | Transcription-repair-coupling factor OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=mfd PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03461 | TRCF | TRCF domain | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005118 | Domain | Transcription-repair-coupling factor, C-terminal domain | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR047112 | Family | ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor | Interproscan |
| IPR037235 | Homologous_superfamily | TRCF-like, C-terminal D7 domain | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47964 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0003678 | Molecular Function | DNA helicase activity | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03723 | mfd; transcription-repair coupling factor (superfamily II helicase) | EC:5.6.2.4 | DNA repair and recombination proteins | ko03400 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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