Detailed information of ANN41670-RA in Montipora grisea

Genomic Location: Scaffold_1275__1_contigs__length_58135:10770...12626
NR annotation: WP_089373890.1, DNA topoisomerase IV subunit B [Dokdonia pacifica]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q59189DNA topoisomerase 4 subunit B OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=parE PE=3 SV=2
P94604DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=gyrB PE=3 SV=2
H7C794DNA topoisomerase 4 subunit B OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=parE PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0041601 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02518
all species →		HATPase_cHistidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan
PF01751
all species →		ToprimToprim domainFamilyInterproscan
PF00204
all species →		DNA_gyraseBDNA gyrase BDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003594
all species →		DomainHistidine kinase/HSP90-like ATPaseInterproscan
IPR001241
all species →		FamilyDNA topoisomerase, type IIAInterproscan
IPR013759
all species →		Homologous_superfamilyDNA topoisomerase, type IIA, subunit B, C-terminalInterproscan
IPR018522
all species →		Conserved_siteDNA topoisomerase, type IIA, conserved siteInterproscan
IPR000565
all species →		FamilyDNA topoisomerase, type IIA, subunit BInterproscan
IPR014721
all species →		Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR013760
all species →		Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR036890
all species →		Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR013506
all species →		DomainDNA topoisomerase, type IIA, subunit B, domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45866
all species →		DNA GYRASE/TOPOISOMERASE SUBUNIT BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003918
all species →		Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02622parE; topoisomerase IV subunit BEC:5.6.2.2
Prokaryotic defense systemko02048deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP