Gene detail

Detailed information of ANN41677-RA in Montipora grisea

Genomic Location: Scaffold_319__1_contigs__length_115675:86467...89592
NR annotation: MYC69983.1, AAA domain-containing protein [Gemmatimonadota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN41677-RA

ATGAGCGAAATTTCCTTGGAGCACGTGCTAGGGCATCAGTACACGGTCTTCGATGGGTTGGCCGGGATGCACGTCGAAGACCTCTATCAGGACCGCCGAGGGTTCCTCTGGATCGCCACGGCCGACGGGGGCGTCAGCCGGTTTGACAGCGCGCATTTCGATACCTTTGCCCTCAAAGACGGCCTGCCGAATCTGACGGTCATGGCCATTGCCGAAGACGCCGACGAGCGGCTGTTGTTCGGCACCTTTGGCGGGGGGATCGCCGCGTATGATGGGCGCGGCTTTCAGGTGTACACCACTGAGCAGGGCCTGCCGTCCAATGAGATCGTGGGTCTGCAAGCCCAGCCGGACGGCTCGATTCTGGTGCTGACCGGCGCGGGCGTGGCGTGGTTTGCCGAGGGCCGCTGCACAAAGTGCATAACGCACGTGGGCGGCCAACCCTTGGGGCGGGTGTACGATATGGCCACCGACGCGGCGGGCACCACTTGGCTGGCGACGTTGGACCAAGGCGTCATTAGCTTGGCTGGGCAGCGCATGGATACGGGCGACCGGGCGATCCAACTGCCTTGGAAGTTCGCCCAAGACCCCTCTGGCCATCTGTGGATTGCCTTCCATTACACCGGCACTGAAGCCTTGATCGGCCGCTACAATCCGCGAGACGAGCAGTTCGCATTCATCGACGTGGGCCATGAGGCTGCGAGGGCAGTGCAAAACGGGACGCGGCACGTGCGGGCCGACGCTAGGGGTTGGCTGTGGCTGGCGCATCGGGGCGTGGTCGTACACGACGGTCGAGCGTGGCACCGTTTTTCCGCCGCCCTGCCGAATATCGATTTTTCGGATACGCGCCTGACGTACGAAGATCGCGAGGGCAATATCTGGATCGGGCTTTGGGGCGGCGGGCTGATTTTTTGCGATCCGGCCAGCATCCGCCGCTACACTGAAGCCGATGGCCTGCCCGACCGCGAGGTTCGCTGCTTGGGCGAAGACTCGGAGGGGCGGATGTGGATTGGCACGATGGGCGGCATGGCCTGCATGGAAGGCGACCAGATTCGTCCGGTGGGGAGCGGTGAAGGCGTCTTGGCGATGGTGGTGGATCGCCAAGGACAGGTCTGGAGCGGCGGGGATGCCGGCAAGGTGTACAAGTGGGAAGGGCAAACGCCCCAAGCGATCGCCGTGGCCGAAAAGGCCCTGGCCGAAGAAATTGACGGGCTGTGCGAAGACGAGCAAGGGCGCATTTGGGTCGCCACGTTCTTGGGCCGCTTGGGCTGGATAGAGGAACATCGCTTCACCCCGTTCGACGGGTGGGTCCCGGACGAGTGCCGCGCCCTGCTGCAAGACGCAAACGGAGTATTCTGGATCGGCTCCTTCGGCAGCATACCGGCACTCTACTGGTACGAGGACGGTCGGTTTCGCCCGGCAGATATGGACGAGGCGGCGGCCACTGCCTACGTCAATGTCTTGTGGGAGCACCAAAACGCCTTGTGGATGGGCACGGCCAAGGGGCTTTTCGTCCGCGACCACTCGTCCGGGCAGGTGCGCCACTTTACCGCCGATCAGTTCGGGCTGTCGGCCAATGGCATCTTGGCGCTGACGGCCGACCCGCTGGGCCACGTTTGGCTTGGCACCAGCGGCGGTGGGGCCCTTCGCTACGACGGCCAGACCTTCCAGAGCATCCGCTTGGGACCATCGGCCCTCGAAAACAAGGTGGAGGCCGTCCTGTGCGACCGCCGCGGCCGGCTGTGGTTTGGAACGCGAGCCGGGCTGGTCGCCTATCAGCCGGGCGACGCGCCCCCGCGTTTGGCGATCCGCGAGGTGATGGCCGGGGGCCTCTTAGCCGCGCCCGAAGCCGTATCCTGCCTAGAGAACACCGCGGAAATCCGCATTCACTTCCAAGGCATTAGCTTCCGCACAGGTGCGAGACAGATGCGCTATCGACACCGCCTGTTAGGGTACGGCCCAGCAGAACAATGGAGCGCGTTCACGGCCGCCGATGAGGTGGCGTATCACGCTTTGCCGGTGGGGGACTACCGCTTTGAGGTACAGACCATGGACCGGGATGGCCTGCGGTCCGAGGTGGTTGGCTTGGATGTCCGCGTCCTCCCGGACGTCAAAACTGAACGCCTCCGCGCCCTCGAGAAGATACTACGGACTACCGATCACGTCGTGCAGAGCCACAGTCGGGCCATGTACGAAGTAATGAAACAGGTCGCGCAGGTAGCCGAGACCAACATGACCGTGCTGGTGCTGGGCGAGACCGGCACCGGCAAGGGCCTGCTCGCTCAGACCGTCCACAAAACGAGCACCCGCCGGGAGCGGCCCTTTATTCAAGTCAATTGCGGGGCGATCCCGGCCGGCCTAATCGAGAGCGAACTGTTCGGCCACGAAAAAGGGGCCTTTACCGGCGCAGCTACCCGTCAGCTTGGCCGCTTTGAACTGGCCGATGGCGGCACCCTCTTTTTAGACGAAATCGGCGATTTGTCGTGGGAGTCTCAGCGAGTTCTGTTGCAGATCTTGGAGGAAAATACCTTGATCCGCATTGGTGGCGAGAAGCCTGTAAAAGTGGATGTGCGAATCGTGGCGGCGACCAACCGCGACCTGTGGCGGGCCATTGAGGAGGGCACGTTCCGCCAAGACCTGTTCTATCGTCTGAGCACCTTTACGCTAGAGCTTCCGCCGCTGCGGCAGCGGCGAGAGGATATACCGGCTTTGGCCGCGCATTTTGCGGAGCGGTATGCCCGCTACTTAAAGCGGCCGGTGCCGACCCTAGACGACGCGGTGATGGCGCACTTGCAGGCGTACTCTTGGCCGGGGAATGTGCGCGAACTGGAGCATCTGATCCAGCGGGGGGTCTTGCTGTGCGAGGGCGGCGTGATGCGCGTGGAGGATTTGACGCTGCCGTCGGTTGCACGGCTAGGTGGAGACCAAGGCGCAAGCAAGCCGCTGTCGCCGGCGGCCCCGTCCACCGCAGGCATGGACGAAAAGCAGCAAATCGTGGAGGCACTGCAAGCCACTAATTGGGTCATCTATGGAGAGCGCGGCGCAGCGCACTTGTTGGGCATGAATCCAGAGCGGCTGCGTTCTCGCATGCGCGTGTACGGGCTGCGGCGACCGAAGAAATCGTCTTAA

Transcript

ANN41677-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P71229	DNA-binding transcriptional activator HyfR OS=Escherichia coli (strain K12) OX=83333 GN=hyfR PE=1 SV=1
E1WAA4	Formate hydrogenlyase transcriptional activator OS=Salmonella typhimurium (strain SL1344) OX=216597 GN=fhlA PE=3 SV=1
P19323	Formate hydrogenlyase transcriptional activator FhlA OS=Escherichia coli (strain K12) OX=83333 GN=fhlA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0066741 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00158 all species →	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF07494 all species →	Reg_prop	Two component regulator propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR002078 all species →	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR025944 all species →	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan
IPR025662 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025943 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR011110 all species →	Repeat	Two component regulator propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071 all species →	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12430	pks1_15; 4-hydroxyphenylalkanoate synthase	EC:2.3.1.261	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.