Gene detail

Detailed information of ANN41723-RA in Montipora grisea

Genomic Location: Scaffold_4522__1_contigs__length_31990:7427...7903
NR annotation: MBA3547805.1, nucleoside deaminase [Nannocystis sp.]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P68398	tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12) OX=83333 GN=tadA PE=1 SV=2
P68397	tRNA-specific adenosine deaminase OS=Shigella flexneri OX=623 GN=tadA PE=3 SV=2
Q8XA44	tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7 OX=83334 GN=tadA PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008134 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14437 all species →	MafB19-deam	MafB19-like deaminase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002125 all species →	Domain	Cytidine and deoxycytidylate deaminase domain	Interproscan
IPR016192 all species →	Binding_site	APOBEC/CMP deaminase, zinc-binding	Interproscan
IPR028883 all species →	Family	tRNA-specific adenosine deaminase	Interproscan
IPR016193 all species →	Homologous_superfamily	Cytidine deaminase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11079 all species →	CYTOSINE DEAMINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0002100 all species →	Biological Process	tRNA wobble adenosine to inosine editing	Interproscan
GO:0008251 all species →	Molecular Function	tRNA-specific adenosine deaminase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11991	tadA; tRNA(adenine34) deaminase	EC:3.5.4.33	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.