Gene detail

Detailed information of ANN41780-RA in Montipora grisea

Genomic Location: Scaffold_3473__1_contigs__length_36202:23365...24825
NR annotation: MXW89469.1, lipoyl synthase [Acidimicrobiaceae bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1AT13	Lipoyl synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / JCM 11954 / NBRC 16129 / PRD-1) OX=266117 GN=lipA PE=3 SV=1
Q67MF5	Lipoyl synthase OS=Symbiobacterium thermophilum (strain DSM 24528 / JCM 14929 / IAM 14863 / T) OX=292459 GN=lipA PE=3 SV=1
Q9K7C9	Lipoyl synthase OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=lipA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF16881 all species →	LIAS_N	N-terminal domain of lipoyl synthase of Radical_SAM family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003698 all species →	Family	Lipoyl synthase	Interproscan
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR031691 all species →	Domain	Lipoyl synthase, N-terminal	Interproscan
IPR004143 all species →	Domain	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10949 all species →	LIPOYL SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009107 all species →	Biological Process	lipoate biosynthetic process	Interproscan
GO:0016992 all species →	Molecular Function	lipoate synthase activity	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03644	lipA, LIAS, LIP1, LIP5; lipoyl synthase	EC:2.8.1.8	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.