Gene detail

Detailed information of ANN41877-RA in Montipora grisea

Genomic Location: Scaffold_8196__1_contigs__length_23164:7812...9638
NR annotation: MBI4575012.1, sigma-54-dependent Fis family transcriptional regulator [Planctomycetota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P17899	Transcriptional regulatory protein FlbD OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=flbD PE=4 SV=2
Q845S7	Sigma54-dependent transcriptional activator SfnR OS=Pseudomonas putida OX=303 GN=sfnR PE=2 SV=1
Q3K999	Sigma54-dependent transcriptional regulator SfnR OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=sfnR PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01590	GAF	GAF domain	Domain	Interproscan
PF00158	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025662	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR002078	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR003018	Domain	GAF domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025943	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR029016	Homologous_superfamily	GAF-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan