Detailed information of Aala_g100.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_002741626.1, PREDICTED: UPF0468 protein C16orf80 homolog [Saccoglossus kowalevskii]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZHP3Cilia- and flagella-associated protein 20 OS=Gallus gallus OX=9031 GN=CFAP20 PE=2 SV=1
Q6B857Cilia- and flagella-associated protein 20 OS=Bos taurus OX=9913 GN=CFAP20 PE=1 SV=1
Q8BTU1Cilia- and flagella-associated protein 20 OS=Mus musculus OX=10090 GN=Cfap20 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01699Na_Ca_exSodium/calcium exchanger proteinFamilyInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00022ActinActinFamilyInterproscan
PF05018CFA20_domCFA20 domainDomainInterproscan
PF21530Pif1_2B_domDNA helicase Pif1, 2B domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR044880Homologous_superfamilyNCX, central ion-binding domain superfamilyInterproscan
IPR004481FamilySodium/potassium/calcium exchangerInterproscan
IPR004837DomainSodium/calcium exchanger membrane regionInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR004000FamilyActin familyInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR004001Conserved_siteActin, conserved siteInterproscan
IPR020902Conserved_siteActin/actin-like conserved siteInterproscan
IPR040441FamilyCilia- and flagella-associated protein 20/CFAP20DCInterproscan
IPR007714DomainCFA20 domainInterproscan
IPR049163DomainDNA helicase Pif1-like, 2B domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10846SODIUM/POTASSIUM/CALCIUM EXCHANGERInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR11937ACTINInterproscan
PTHR12458ORF PROTEINInterproscan
PTHR23274DNA HELICASE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005262Molecular Functioncalcium channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0006874Biological Processintracellular calcium ion homeostasisInterproscan
GO:0008273Molecular Functioncalcium, potassium:sodium antiporter activityInterproscan
GO:0070588Biological Processcalcium ion transmembrane transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0031514Cellular Componentmotile ciliumInterproscan
GO:0036064Cellular Componentciliary basal bodyInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0060296Biological Processregulation of cilium beat frequency involved in ciliary motilityInterproscan
GO:2000147Biological Processpositive regulation of cell motilityInterproscan
GO:0005657Cellular Componentreplication forkInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K21812E5; Alphapapillomavirus protein E5-Cilium and associated proteinsko03037deepkoala
Viral proteinsko03200deepkoala

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