Detailed information of Aala_g1000.t1 in Alatina alata

Genomic Location: :...
NR annotation: KXJ18572.1, Gamma-aminobutyric acid receptor subunit beta-1 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P24045Gamma-aminobutyric acid receptor subunit beta-4 OS=Gallus gallus OX=9031 GN=GABRB4 PE=2 SV=1
P0C2W5Gamma-aminobutyric acid receptor subunit beta-2 (Fragment) OS=Bos taurus OX=9913 GN=GABRB2 PE=1 SV=1
P63138Gamma-aminobutyric acid receptor subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Gabrb2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF04153NOT2_3_5_CNOT2/NOT3/NOT5 C-terminalDomainInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR038635Homologous_superfamilyCCR4-NOT complex subunit 2/3/5, C-terminal domain superfamilyInterproscan
IPR040168FamilyNot2/Not3/Not5Interproscan
IPR007282DomainNOT2/NOT3/NOT5, C-terminalInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR45749-Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR1094326S PROTEASOME NON-ATPASE REGULATORY SUBUNITInterproscan
PTHR23326CCR4 NOT-RELATEDInterproscan
PTHR46114APPLE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0008540Cellular Componentproteasome regulatory particle, base subcomplexInterproscan
GO:0034515Cellular Componentproteasome storage granuleInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0030015Cellular ComponentCCR4-NOT core complexInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0005231Molecular Functionexcitatory extracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005254Molecular Functionchloride channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:1902476Biological Processchloride transmembrane transportInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15033ICT1, MRPL58; peptidyl-tRNA hydrolase ICT1EC:3.1.1.29
Translation factorsko03012deepkoala

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