Gene detail

Detailed information of Aala_g1022.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAG1952105.1, retrotransposable element [Pimephales promelas]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
P0CT34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1
P0CT35	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF02375	JmjN	jmjN domain	Family	Interproscan
PF01541	GIY-YIG	GIY-YIG catalytic domain	Domain	Interproscan
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR003349	Domain	JmjN domain	Interproscan
IPR040341	Family	G patch domain-containing protein 3	Interproscan
IPR035901	Homologous_superfamily	GIY-YIG endonuclease superfamily	Interproscan
IPR000305	Domain	GIY-YIG endonuclease	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR050479	Family	Cytochrome P450, families 11 and 27	Interproscan
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000980	Domain	SH2 domain	Interproscan
IPR051846	Family	SH2 domain-containing adapter proteins	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001752	Domain	Kinesin motor domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR10694	LYSINE-SPECIFIC DEMETHYLASE	Interproscan
PTHR14390	G PATCH DOMAIN CONTAINING PROTEIN 3	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR24279	-	Interproscan
PTHR15127	HEAVYWEIGHT, ISOFORM A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0032452	Molecular Function	histone demethylase activity	Interproscan
GO:0034647	Molecular Function	histone H3K4me/H3K4me2/H3K4me3 demethylase activity	Interproscan
GO:0032480	Biological Process	negative regulation of type I interferon production	Interproscan
GO:0039536	Biological Process	negative regulation of RIG-I signaling pathway	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006700	Biological Process	C21-steroid hormone biosynthetic process	Interproscan
GO:0006704	Biological Process	glucocorticoid biosynthetic process	Interproscan
GO:0008203	Biological Process	cholesterol metabolic process	Interproscan
GO:0034650	Biological Process	cortisol metabolic process	Interproscan
GO:0071375	Biological Process	cellular response to peptide hormone stimulus	Interproscan
GO:0001784	Molecular Function	phosphotyrosine residue binding	Interproscan
GO:0003777	Molecular Function	microtubule motor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27031	K27031; Inoviridae putative minor coat protein	-	Peptidases and inhibitors	ko01002	deepkoala
			Domain-containing proteins not elsewhere classified	ko04990	deepkoala
			Viral proteins	-	deepkoala