Genomic Location: :...
NR annotation: KAJ8356655.1, hypothetical protein SKAU_G00194490 [Synaphobranchus kaupii]
| CDS | ||||
| Transcript |
| Protein |
| Uniprot term | Description |
|---|---|
| P21328 | RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1 |
| P21329 | RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris OX=7221 GN=jockeypol PE=1 SV=1 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | Domain | Interproscan |
| PF13650 | Asp_protease_2 | Aspartyl protease | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR025724 | Domain | GAG-pre-integrase domain | Interproscan |
| IPR031160 | Domain | F-BAR domain | Interproscan |
| IPR005819 | Family | Linker histone H1/H5 | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR021109 | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR043128 | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR039586 | Family | Cilia- and flagella-associated protein 46 | Interproscan |
| IPR009057 | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47027 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR42648 | TRANSPOSASE, PUTATIVE-RELATED | Interproscan |
| PTHR40866 | DIMER_TNP_HAT DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR19446 | REVERSE TRANSCRIPTASES | Interproscan |
| PTHR46238 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR15977 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| GO:0000786 | Cellular Component | nucleosome | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0006334 | Biological Process | nucleosome assembly | Interproscan |
| GO:0030527 | Molecular Function | structural constituent of chromatin | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0035082 | Biological Process | axoneme assembly | Interproscan |
| GO:0060294 | Biological Process | cilium movement involved in cell motility | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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