Genomic Location: :...
NR annotation: CAC5373375.1, unnamed protein product [Mytilus coruscus]
| CDS | |||||
| Transcript |
| Protein |
| Uniprot term | Description |
|---|---|
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | Family | Interproscan |
| PF00098 | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | Family | Interproscan |
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | Domain | Interproscan |
| PF18701 | DUF5641 | Family of unknown function (DUF5641) | Domain | Interproscan |
| PF09380 | FERM_C | FERM C-terminal PH-like domain | Domain | Interproscan |
| PF03372 | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR013103 | Domain | Reverse transcriptase, RNA-dependent DNA polymerase | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR025724 | Domain | GAG-pre-integrase domain | Interproscan |
| IPR040676 | Domain | Domain of unknown function DUF5641 | Interproscan |
| IPR026630 | Family | EPM2A-interacting protein 1/ZBED8-like | Interproscan |
| IPR011993 | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR018980 | Domain | FERM, C-terminal PH-like domain | Interproscan |
| IPR000299 | Domain | FERM domain | Interproscan |
| IPR036691 | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR027124 | Family | SWR1-complex protein 5/Craniofacial development protein 1/2 | Interproscan |
| IPR005135 | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42648 | TRANSPOSASE, PUTATIVE-RELATED | Interproscan |
| PTHR22955 | RETROTRANSPOSON | Interproscan |
| PTHR45913 | EPM2A-INTERACTING PROTEIN 1 | Interproscan |
| PTHR38681 | RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED | Interproscan |
| PTHR23280 | 4.1 G PROTEIN | Interproscan |
| PTHR23227 | BUCENTAUR RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| GO:0005856 | Cellular Component | cytoskeleton | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006338 | Biological Process | chromatin remodeling | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14490 | AHP; histidine-containing phosphotransfer peotein | - | Plant hormone signal transduction | ko04075 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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