Detailed information of Aala_g1068.t1 in Alatina alata

Genomic Location: :...
NR annotation: WBB44924.1, reverse transcriptase [Chrysogorgia stellata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
E9Q414Apolipoprotein B-100 OS=Mus musculus OX=10090 GN=Apob PE=1 SV=1
Q7TMA5Apolipoprotein B-100 OS=Rattus norvegicus OX=10116 GN=Apob PE=1 SV=1
Q2T9S3DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF05158RNA_pol_Rpc34RNA polymerase Rpc34 subunitFamilyInterproscan
PF01347Vitellogenin_NLipoprotein amino terminal regionRepeatInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF20049DUF6451Domain of unknown function (DUF6451)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR016049FamilyRNA polymerase Rpc34-likeInterproscan
IPR007832FamilyRNA polymerase Rpc34Interproscan
IPR011030Homologous_superfamilyLipovitellin-phosvitin complex, superhelical domainInterproscan
IPR001747DomainVitellogenin, N-terminalInterproscan
IPR052418FamilyApolipoprotein BInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR045609DomainDomain of unknown function DUF6451Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDInterproscan
PTHR13769APOLIPOPROTEIN BInterproscan
PTHR45749-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005666Cellular ComponentRNA polymerase III complexInterproscan
GO:0006383Biological Processtranscription by RNA polymerase IIIInterproscan
GO:0005319Molecular Functionlipid transporter activityInterproscan
GO:0006869Biological Processlipid transportInterproscan
GO:0006642Biological Processtriglyceride mobilizationInterproscan
GO:0030301Biological Processcholesterol transportInterproscan
GO:0034359Cellular Componentmature chylomicronInterproscan
GO:0034361Cellular Componentvery-low-density lipoprotein particleInterproscan
GO:0034362Cellular Componentlow-density lipoprotein particleInterproscan
GO:0042632Biological Processcholesterol homeostasisInterproscan
GO:0042953Biological Processlipoprotein transportInterproscan
GO:0050750Molecular Functionlow-density lipoprotein particle receptor bindingInterproscan
GO:0120020Molecular Functioncholesterol transfer activityInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03025RPC6, POLR3F; DNA-directed RNA polymerase III subunit RPC6-Transcription machineryko03021deepkoala

TOP