Detailed information of Aala_g1079.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAF2230421.1, unnamed protein product [Rotaria magnacalcarata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O00370LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P11369LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2
P08548LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1
Gene familySubfamily
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF00435SpectrinSpectrin repeatDomainInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR011129DomainCold shock domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR050599FamilyVoltage-dependent calcium channel alpha-1 subunitInterproscan
IPR005821DomainIon transport domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR45628VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0005891Cellular Componentvoltage-gated calcium channel complexInterproscan
GO:0008331Molecular Functionhigh voltage-gated calcium channel activityInterproscan
GO:0098703Biological Processcalcium ion import across plasma membraneInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06099CSDA, ZONAB; cold shock domain protein A-Spliceosomeko03041deepkoala

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