Gene detail

Detailed information of Aala_g1085.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAH1244514.1, Hypp7329 [Branchiostoma lanceolatum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q1LVF0	Laminin subunit gamma-1 OS=Danio rerio OX=7955 GN=lamc1 PE=2 SV=2
P11047	Laminin subunit gamma-1 OS=Homo sapiens OX=9606 GN=LAMC1 PE=1 SV=3
A0JP86	Laminin subunit gamma-1 OS=Xenopus tropicalis OX=8364 GN=lamc1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00055	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan
PF00053	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF06371	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF01094	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF04109	ATG9	Autophagy protein ATG9	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR008211	Domain	Laminin, N-terminal	Interproscan
IPR050440	Family	Laminin/Netrin Extracellular Matrix	Interproscan
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027649	Family	Inverted formin-2	Interproscan
IPR010473	Domain	Formin, GTPase-binding domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR050726	Family	Metabotropic Glutamate Receptor	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001828	Domain	Receptor, ligand binding region	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR007241	Family	Autophagy-related protein 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10574	NETRIN/LAMININ-RELATED	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR48209	AGL056WP	Interproscan
PTHR46345	INVERTED FORMIN-2	Interproscan
PTHR10827	RETICULOCALBIN	Interproscan
PTHR24060	METABOTROPIC GLUTAMATE RECEPTOR	Interproscan
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR13038	APG9 AUTOPHAGY 9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888	Biological Process	tissue development	Interproscan
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0001640	Molecular Function	adenylate cyclase inhibiting G protein-coupled glutamate receptor activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007216	Biological Process	G protein-coupled glutamate receptor signaling pathway	Interproscan
GO:0051966	Biological Process	regulation of synaptic transmission, glutamatergic	Interproscan
GO:0000407	Cellular Component	phagophore assembly site	Interproscan
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005776	Cellular Component	autophagosome	Interproscan
GO:0006914	Biological Process	autophagy	Interproscan
GO:0034497	Biological Process	protein localization to phagophore assembly site	Interproscan
GO:0044805	Biological Process	obsolete late nucleophagy	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21812	E5; Alphapapillomavirus protein E5	-	Viral proteins	ko03200	deepkoala