Detailed information of Aala_g1106.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_028827559.1, tripartite motif-containing protein 35-like, partial [Denticeps clupeoides]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q810I2E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus OX=10090 GN=Trim50 PE=1 SV=1
Q92021Nuclear factor 7, brain OS=Xenopus laevis OX=8355 PE=1 SV=1
Q8IYM9E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens OX=9606 GN=TRIM22 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19281PHYHIP_CPhytanoyl-CoA hydroxylase-interacting protein C-terminusFamilyInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13516LRR_6Leucine Rich repeatRepeatInterproscan
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF13634Nucleoporin_FGNucleoporin FG repeat regionFamilyInterproscan
PF00860Xan_ur_permeasePermease familyFamilyInterproscan
PF03645Tctex-1Tctex-1 familyFamilyInterproscan
PF00754F5_F8_type_CF5/8 type C domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042868FamilyPhytanoyl-CoA hydroxylase-interacting protein-likeInterproscan
IPR045545DomainPhytanoyl-CoA hydroxylase-interacting protein-like, C-terminalInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR052394FamilyLeucine-rich repeat-containing proteinInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR052958FamilyInterferon-induced PKR regulatorInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR050143FamilyTripartite motif-containingInterproscan
IPR051041FamilyFMRFamide-related neuropeptideInterproscan
IPR025574RepeatNucleoporin FG repeatInterproscan
IPR006043FamilyNucleobase cation symporter 2 familyInterproscan
IPR005334FamilyDynein light chain Tctex-1 likeInterproscan
IPR038586Homologous_superfamilyTctex-1-like superfamilyInterproscan
IPR000421DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15698PROTEIN CBG15099Interproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR24114LEUCINE RICH REPEAT FAMILY PROTEINInterproscan
PTHR4628952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATEDInterproscan
PTHR24103E3 UBIQUITIN-PROTEIN LIGASE TRIMInterproscan
PTHR20986FMRFAMIDE-RELATED PEPTIDESInterproscan
PTHR11119XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBERInterproscan
PTHR21255T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAINInterproscan
PTHR24543MULTICOPPER OXIDASE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005215Molecular Functiontransporter activityInterproscan
GO:0005868Cellular Componentcytoplasmic dynein complexInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14319RANGAP1; Ran GTPase-activating protein 1-Messenger RNA biogenesisko03019deepkoala

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