Detailed information of Aala_g1129.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFN81373.1, retrovirus-related pol polyprotein from type-1 retrotransposable element r2 [Plakobranchus ocellatus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P08548LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1
P11369LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2
P21329RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris OX=7221 GN=jockeypol PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13892DBINODNA-binding domainDomainInterproscan
PF00538Linker_histonelinker histone H1 and H5 familyDomainInterproscan
PF03283PAEPectinacetylesteraseFamilyInterproscan
PF00005ABC_tranABC transporterDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF10280Med11Mediator complex protein FamilyInterproscan
PF01041DegT_DnrJ_EryC1DegT/DnrJ/EryC1/StrS aminotransferase familyDomainInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR020838DomainDBINO domainInterproscan
IPR050520FamilyINO80/SWR1 chromatin remodeling helicaseInterproscan
IPR005818DomainLinker histone H1/H5, domain H15Interproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR001969Active_siteAspartic peptidase, active siteInterproscan
IPR004963FamilyPectinacetylesterase/NOTUMInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003439DomainABC transporter-like, ATP-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR019404FamilyMediator complex, subunit Med11Interproscan
IPR000653FamilyDegT/DnrJ/EryC1/StrS aminotransferaseInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45685HELICASE SRCAP-RELATEDInterproscan
PTHR21562NOTUM-RELATEDInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR22890UNCHARACTERIZEDInterproscan
PTHR30244TRANSAMINASEInterproscan
PTHR46599PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4Interproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0031011Cellular ComponentIno80 complexInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0043044Biological Processchromatin remodelingInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0000271Biological Processpolysaccharide biosynthetic processInterproscan
GO:0008483Molecular Functiontransaminase activityInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15131MED11; mediator of RNA polymerase II transcription subunit 11-Transcription machineryko03021deepkoala

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