Detailed information of Aala_g1132.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFT94383.1, probable ornithine decarboxylase [Nephila pilipes]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q54UF3Probable ornithine decarboxylase OS=Dictyostelium discoideum OX=44689 GN=odc PE=3 SV=1
P07805Ornithine decarboxylase OS=Trypanosoma brucei brucei OX=5702 PE=1 SV=2
P27121Ornithine decarboxylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=spe-1 PE=2 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF04775Bile_Hydr_TransAcyl-CoA thioester hydrolase/BAAT N-terminal regionFamilyInterproscan
PF00153Mito_carrMitochondrial carrier proteinRepeatInterproscan
PF02784Orn_Arg_deC_NPyridoxal-dependent decarboxylase, pyridoxal binding domainDomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF07221GlcNAc_2-epimN-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)RepeatInterproscan
PF13613HTH_Tnp_4Helix-turn-helix of DDE superfamily endonucleaseDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR042490Homologous_superfamilyAcyl-CoA thioester hydrolase/BAAT, N-terminalInterproscan
IPR006862DomainAcyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferaseInterproscan
IPR023395Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR018108RepeatMitochondrial substrate/solute carrierInterproscan
IPR050567FamilyMitochondrial CarrierInterproscan
IPR022644DomainOrn/DAP/Arg decarboxylase 2, N-terminalInterproscan
IPR029066Homologous_superfamilyPLP-binding barrelInterproscan
IPR002433FamilyOrnithine decarboxylaseInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR012341Homologous_superfamilySix-hairpin glycosidase-like superfamilyInterproscan
IPR008928Homologous_superfamilySix-hairpin glycosidase superfamilyInterproscan
IPR010819FamilyN-acylglucosamine 2-epimerase/Cellobiose 2-epimeraseInterproscan
IPR027805DomainTransposase, Helix-turn-helix domainInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050173FamilyATP-binding cassette transporter CInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47018CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10824ACYL-COENZYME A THIOESTERASE-RELATEDInterproscan
PTHR46954C2H2-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45624MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATEDInterproscan
PTHR11482ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASEInterproscan
PTHR15108N-ACYLGLUCOSAMINE-2-EPIMERASEInterproscan
PTHR23080THAP DOMAIN PROTEINInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR24223ATP-BINDING CASSETTE SUB-FAMILY CInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006631Biological Processfatty acid metabolic processInterproscan
GO:0006637Biological Processacyl-CoA metabolic processInterproscan
GO:0047617Molecular Functionfatty acyl-CoA hydrolase activityInterproscan
GO:0005740Cellular Componentmitochondrial envelopeInterproscan
GO:0006810Biological ProcesstransportInterproscan
GO:0006839Biological Processmitochondrial transportInterproscan
GO:0015227Molecular Functionacyl carnitine transmembrane transporter activityInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:1902603Biological Processcarnitine transmembrane transportInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0006596Biological Processpolyamine biosynthetic processInterproscan
GO:0004586Molecular Functionornithine decarboxylase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0033387Biological Processputrescine biosynthetic process from ornithineInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0006044Biological ProcessN-acetylglucosamine metabolic processInterproscan
GO:0006051Biological ProcessN-acetylmannosamine metabolic processInterproscan
GO:0050121Molecular FunctionN-acylglucosamine 2-epimerase activityInterproscan
GO:0016853Molecular Functionisomerase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0042626Molecular FunctionATPase-coupled transmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan

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