Detailed information of Aala_g1136.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAC5373375.1, unnamed protein product [Mytilus coruscus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P0CT41Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
P0CT34Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1
P0CT35Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02469FasciclinFasciclin domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF10545MADF_DNA_bdgAlcohol dehydrogenase transcription factor Myb/SANT-likeDomainInterproscan
PF13961DUF4219Domain of unknown function (DUF4219)DomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036378Homologous_superfamilyFAS1 domain superfamilyInterproscan
IPR000782DomainFAS1 domainInterproscan
IPR050904FamilyCell adhesion and biosynthesis-related proteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR050930FamilyMajor Facilitator Superfamily Vesicular TransporterInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001995DomainPeptidase A2A, retrovirus, catalyticInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR001969Active_siteAspartic peptidase, active siteInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR034132DomainRetropepsin Saci-like domainInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR023214Homologous_superfamilyHAD superfamilyInterproscan
IPR006578DomainMADF domainInterproscan
IPR039353FamilyTranscription factor Adf-1Interproscan
IPR025314DomainDomain of unknown function DUF4219Interproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR051637FamilyAnkyrin repeat domain-containing protein 49Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10900PERIOSTIN-RELATEDInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23506-Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR12243MADF DOMAIN TRANSCRIPTION FACTORInterproscan
PTHR35317OS04G0629600 PROTEINInterproscan
PTHR24180CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0050839Molecular Functioncell adhesion molecule bindingInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12419FADS6; fatty acid desaturase 6EC:1.14.19.-
Lipid biosynthesis proteinsko01004deepkoala

TOP