Detailed information of Aala_g1177.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4023114.1, zinc finger 862-like, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P15390Sodium channel protein type 4 subunit alpha OS=Rattus norvegicus OX=10116 GN=Scn4a PE=1 SV=1
Q9ER60Sodium channel protein type 4 subunit alpha OS=Mus musculus OX=10090 GN=Scn4a PE=1 SV=1
O88420Sodium channel protein type 8 subunit alpha OS=Rattus norvegicus OX=10116 GN=Scn8a PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00520Ion_transIon transport proteinFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037357FamilyCOMM domain-containing protein 5Interproscan
IPR027359Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR043203FamilyVoltage-gated cation channel calcium and sodiumInterproscan
IPR005821DomainIon transport domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013956FamilyE3 ubiquitin ligase Bre1Interproscan
IPR037218Homologous_superfamilyPTPA superfamilyInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR042972FamilyInsulinoma-associated protein 1/2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15666COMM DOMAIN CONTAINING PROTEIN 5Interproscan
PTHR10037VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUMInterproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan
PTHR46880RAS-ASSOCIATING DOMAIN-CONTAINING PROTEINInterproscan
PTHR23163RING FINGER PROTEIN-RELATEDInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR15065INSULINOMA-ASSOCIATED 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0001518Cellular Componentvoltage-gated sodium channel complexInterproscan
GO:0005248Molecular Functionvoltage-gated sodium channel activityInterproscan
GO:0005261Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0033503Cellular ComponentHULC complexInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071894Biological Processobsolete histone H2B conserved C-terminal lysine ubiquitinationInterproscan
GO:0019211Molecular Functionphosphatase activator activityInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0001227Molecular FunctionDNA-binding transcription repressor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0010564Biological Processregulation of cell cycle processInterproscan
GO:0017053Cellular Componenttranscription repressor complexInterproscan
GO:0030182Biological Processneuron differentiationInterproscan

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