Detailed information of Aala_g1183.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB3998996.1, 60S ribosomal L23a [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q24JY1Large ribosomal subunit protein uL23 OS=Bos taurus OX=9913 GN=RPL23A PE=1 SV=1
P62750Large ribosomal subunit protein uL23 OS=Homo sapiens OX=9606 GN=RPL23A PE=1 SV=1
P62751Large ribosomal subunit protein uL23 OS=Mus musculus OX=10090 GN=Rpl23a PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03939Ribosomal_L23eNRibosomal protein L23, N-terminal domainFamilyInterproscan
PF00276Ribosomal_L23Ribosomal protein L23FamilyInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF08393DHC_N2Dynein heavy chain, N-terminal region 2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR005633DomainLarge ribosomal subunit protein uL23, N-terminalInterproscan
IPR012678Homologous_superfamilyRibosomal protein uL23/eL15/eS24 core domain superfamilyInterproscan
IPR019985FamilyLarge ribosomal subunit protein uL23Interproscan
IPR013025FamilyLarge ribosomal subunit protein uL23-likeInterproscan
IPR001014Conserved_siteLarge ribosomal subunit protein uL23, conserved siteInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR013602DomainDynein heavy chain, linkerInterproscan
IPR026983FamilyDynein heavy chainInterproscan
IPR014010DomainREJ domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR1162060S RIBOSOMAL PROTEIN L23AInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR10676DYNEIN HEAVY CHAIN FAMILY PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0000027Biological Processribosomal large subunit assemblyInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005930Cellular ComponentaxonemeInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0008569Molecular Functionminus-end-directed microtubule motor activityInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0060294Biological Processcilium movement involved in cell motilityInterproscan
GO:0097729Cellular Component9+2 motile ciliumInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18733LARP6; la-related protein 6-Ribosomeko03011deepkoala
Messenger RNA biogenesisko03019deepkoala

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