Detailed information of Aala_g1219.t1 in Alatina alata

Genomic Location: :...
NR annotation: VZI42315.1, unnamed protein product [Spirometra erinaceieuropaei]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q94HW2Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Transcription Factors FamilyPC4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12230PRP21_like_PPre-mRNA splicing factor PRP21 like proteinFamilyInterproscan
PF00618RasGEF_NRasGEF N-terminal motifDomainInterproscan
PF00617RasGEFRasGEF domainFamilyInterproscan
PF02229PC4Transcriptional Coactivator p15 (PC4)DomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022030DomainSplicing factor 3A subunit 1, conserved domainInterproscan
IPR045146FamilySplicing factor 3A subunit 1Interproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001895DomainRas guanine-nucleotide exchange factors catalytic domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR000651DomainRas-like guanine nucleotide exchange factor, N-terminalInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR036964Homologous_superfamilyRas guanine-nucleotide exchange factor, catalytic domain superfamilyInterproscan
IPR023578Homologous_superfamilyRas guanine nucleotide exchange factor domain superfamilyInterproscan
IPR019804Conserved_siteRas guanine-nucleotide exchange factor, conserved siteInterproscan
IPR008937FamilyRas-like guanine nucleotide exchange factorInterproscan
IPR003173DomainTranscriptional coactivator p15 (PC4), C-terminalInterproscan
IPR045125FamilyRNA polymerase II transcriptional coactivator Sub1/Tcp4-likeInterproscan
IPR009044Homologous_superfamilyssDNA-binding transcriptional regulatorInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15316SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDInterproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR23113GUANINE NUCLEOTIDE EXCHANGE FACTORInterproscan
PTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR23235KRUEPPEL-LIKE TRANSCRIPTION FACTORInterproscan
PTHR45749-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0007264Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007265Biological ProcessRas protein signal transductionInterproscan
GO:0043547Biological Processpositive regulation of GTPase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0060261Biological Processpositive regulation of transcription initiation by RNA polymerase IIInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

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