Detailed information of Aala_g1253.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_027222485.1, uncharacterized protein LOC113814636 [Penaeus vannamei]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A1A5V9Elongator complex protein 5 OS=Danio rerio OX=7955 GN=elp5 PE=2 SV=1
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019519FamilyElongator complex protein 5Interproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR014010DomainREJ domainInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15641ELONGATOR COMPLEX PROTEIN 5Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0002098Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006400Biological ProcesstRNA modificationInterproscan
GO:0033588Cellular Componentelongator holoenzyme complexInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13784PTMA; prothymosin alpha-Transportersko02000deepkoala
Transportersko02000deepkoala
Others-deepkoala

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