Gene detail

Detailed information of Aala_g1265.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAG1686094.1, Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 [Nymphon striatum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q91ZQ5	Retinoid isomerohydrolase OS=Mus musculus OX=10090 GN=Rpe65 PE=1 SV=4
Q28175	Retinoid isomerohydrolase OS=Bos taurus OX=9913 GN=RPE65 PE=1 SV=4
Q16518	Retinoid isomerohydrolase OS=Homo sapiens OX=9606 GN=RPE65 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF03055	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004244	Family	Transposase, L1	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR050372	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR004294	Family	Carotenoid oxygenase	Interproscan
IPR048287	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47481	-	Interproscan
PTHR11505	L1 TRANSPOSABLE ELEMENT-RELATED	Interproscan
PTHR15036	PIKACHURIN-LIKE PROTEIN	Interproscan
PTHR10543	BETA-CAROTENE DIOXYGENASE	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0032197	Biological Process	retrotransposition	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003834	Molecular Function	beta-carotene 15,15'-dioxygenase activity	Interproscan
GO:0004744	Molecular Function	obsolete retinal isomerase activity	Interproscan
GO:0010436	Molecular Function	carotenoid dioxygenase activity	Interproscan
GO:0016121	Biological Process	carotene catabolic process	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02956	RP-S15, MRPS15, rpsO; small subunit ribosomal protein S15	-	Translation factors	ko03012	deepkoala
			Viral proteins	ko03200	deepkoala
			Ribosome	ko03011	deepkoala