Detailed information of Aala_g1281.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4018430.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q03468DNA excision repair protein ERCC-6 OS=Homo sapiens OX=9606 GN=ERCC6 PE=1 SV=1
F8VPZ5DNA excision repair protein ERCC-6 OS=Mus musculus OX=10090 GN=Ercc6 PE=1 SV=1
Q9UR24DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rhp26 PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF08385DHC_N1Dynein heavy chain, N-terminal region 1FamilyInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026205FamilyProgesterone-induced-blocking factor 1Interproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR050496FamilySNF2/RAD54 Helicase and DNA RepairInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013594DomainDynein heavy chain, tailInterproscan
IPR052160FamilyGypsy Retrotransposon Integrase-likeInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR035901Homologous_superfamilyGIY-YIG endonuclease superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18950PROGESTERONE-INDUCED BLOCKING FACTOR 1Interproscan
PTHR45629SNF2/RAD54 FAMILY MEMBERInterproscan
PTHR47266ENDONUCLEASE-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR45749-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0034451Cellular Componentcentriolar satelliteInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006283Biological Processtranscription-coupled nucleotide-excision repairInterproscan
GO:0008094Molecular FunctionATP-dependent activity, acting on DNAInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01507ppa; inorganic pyrophosphataseEC:3.6.1.1
DNA repair and recombination proteinsko03400deepkoala
Transportersko02000deepkoala
Oxidative phosphorylationko00190deepkoala

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