Detailed information of Aala_g1294.t1 in Alatina alata

Genomic Location: :...
NR annotation: AWD93457.1, histone deacetylase 3, partial [Corvus splendens]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P56520Histone deacetylase 3 OS=Gallus gallus OX=9031 GN=HDAC3 PE=2 SV=1
O15379Histone deacetylase 3 OS=Homo sapiens OX=9606 GN=HDAC3 PE=1 SV=2
O88895Histone deacetylase 3 OS=Mus musculus OX=10090 GN=Hdac3 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyFork_head

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00250ForkheadForkhead domainDomainInterproscan
PF13086AAA_11AAA domainDomainInterproscan
PF13087AAA_12AAA domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF16484CPT_NCarnitine O-palmitoyltransferase N-terminusDomainInterproscan
PF00850Hist_deacetylHistone deacetylase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001766DomainFork head domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR050211FamilyForkhead box domain-containing proteinInterproscan
IPR047519DomainForkhead box protein Q2-like, forkhead domainInterproscan
IPR030456Conserved_siteFork head domain conserved site 2Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR045055FamilyDNA2/NAM7-like helicaseInterproscan
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR000967DomainZinc finger, NF-X1-typeInterproscan
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR032476DomainCarnitine O-palmitoyltransferase, N-terminalInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR023696Homologous_superfamilyUreohydrolase domain superfamilyInterproscan
IPR037138Homologous_superfamilyHistone deacetylase domain superfamilyInterproscan
IPR050284FamilyHistone deacetylase and polyamine deacetylaseInterproscan
IPR023801DomainHistone deacetylase domainInterproscan
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11829FORKHEAD BOX PROTEINInterproscan
PTHR10887DNA2/NAM7 HELICASE FAMILYInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR10625HISTONE DEACETYLASE HDAC1-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0031048Biological Processregulatory ncRNA-mediated heterochromatin formationInterproscan
GO:0031380Cellular Componentnuclear RNA-directed RNA polymerase complexInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004407Molecular Functionhistone deacetylase activityInterproscan
GO:0016575Biological Processobsolete histone deacetylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K27391ZNFX1; NFX1-type zinc finger-containing protein 1-Viral proteinsko03200deepkoala
RIG-I-like receptor signaling pathwayko04622deepkoala

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