Detailed information of Aala_g1297.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_050395196.1, tubulin beta chain isoform X2 [Patella vulgata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P11833Tubulin beta chain OS=Paracentrotus lividus OX=7656 PE=2 SV=1
Q3MHM5Tubulin beta-4B chain OS=Bos taurus OX=9913 GN=TUBB4B PE=1 SV=1
P68371Tubulin beta-4B chain OS=Homo sapiens OX=9606 GN=TUBB4B PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00091TubulinTubulin/FtsZ family, GTPase domainDomainInterproscan
PF03953Tubulin_CTubulin C-terminal domainDomainInterproscan
PF12832MFS_1_likeMFS_1 like familyFamilyInterproscan
PF00538Linker_histonelinker histone H1 and H5 familyDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023123Homologous_superfamilyTubulin, C-terminalInterproscan
IPR003008DomainTubulin/FtsZ, GTPase domainInterproscan
IPR017975Conserved_siteTubulin, conserved siteInterproscan
IPR013838Binding_siteBeta tubulin, autoregulation binding siteInterproscan
IPR000217FamilyTubulinInterproscan
IPR036525Homologous_superfamilyTubulin/FtsZ, GTPase domain superfamilyInterproscan
IPR018316DomainTubulin/FtsZ, 2-layer sandwich domainInterproscan
IPR002453FamilyBeta tubulinInterproscan
IPR037103Homologous_superfamilyTubulin/FtsZ-like, C-terminal domainInterproscan
IPR008280Homologous_superfamilyTubulin/FtsZ, C-terminalInterproscan
IPR024989DomainMajor facilitator superfamily associated domainInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR051717FamilyMajor facilitator superfamily MFSD6Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR005818DomainLinker histone H1/H5, domain H15Interproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050382FamilyMajor Facilitator Superfamily Sodium/Anion CotransporterInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR027378Homologous_superfamilyCyclic nucleotide-regulated ion channel, N-terminalInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR000225RepeatArmadilloInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11588TUBULINInterproscan
PTHR16172UNCHARACTERIZEDInterproscan
PTHR11467HISTONE H1Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR11662SOLUTE CARRIER FAMILY 17Interproscan
PTHR46241ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005874Cellular ComponentmicrotubuleInterproscan
GO:0007017Biological Processmicrotubule-based processInterproscan
GO:0000226Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0005200Molecular Functionstructural constituent of cytoskeletonInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030261Biological Processchromosome condensationInterproscan
GO:0031492Molecular Functionnucleosomal DNA bindingInterproscan
GO:0045910Biological Processnegative regulation of DNA recombinationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0006820Biological Processmonoatomic anion transportInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11275H1_5; histone H1/5-Exosomeko04147deepkoala
Chromosome and associated proteinsko03036deepkoala

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