Gene detail

Detailed information of Aala_g1348.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB1322741.1, unnamed protein product [Coregonus sp. 'balchen']

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q14008	Cytoskeleton-associated protein 5 OS=Homo sapiens OX=9606 GN=CKAP5 PE=1 SV=3
A2AGT5	Cytoskeleton-associated protein 5 OS=Mus musculus OX=10090 GN=Ckap5 PE=1 SV=1
Q9PT63	Cytoskeleton-associated protein 5-A OS=Xenopus laevis OX=8355 GN=ckap5-a PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01588	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF01909	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002547	Domain	tRNA-binding domain	Interproscan
IPR051270	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR002934	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR045862	Family	Nucleotidyltransferase Trf4-like	Interproscan
IPR045110	Family	XMAP215	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11586	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan
PTHR46599	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR23092	POLY(A) RNA POLYMERASE	Interproscan
PTHR12609	MICROTUBULE ASSOCIATED PROTEIN XMAP215	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0004652	Molecular Function	obsolete polynucleotide adenylyltransferase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0031123	Biological Process	RNA 3'-end processing	Interproscan
GO:0031499	Cellular Component	TRAMP complex	Interproscan
GO:1990817	Molecular Function	poly(A) RNA polymerase activity	Interproscan
GO:0000776	Cellular Component	kinetochore	Interproscan
GO:0000922	Cellular Component	spindle pole	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0007051	Biological Process	spindle organization	Interproscan
GO:0007052	Biological Process	mitotic spindle organization	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030951	Biological Process	establishment or maintenance of microtubule cytoskeleton polarity	Interproscan
GO:0035371	Cellular Component	microtubule plus-end	Interproscan
GO:0046785	Biological Process	microtubule polymerization	Interproscan
GO:0051010	Molecular Function	microtubule plus-end binding	Interproscan
GO:0051298	Biological Process	centrosome duplication	Interproscan
GO:0061863	Molecular Function	microtubule plus end polymerase	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan