Detailed information of Aala_g1358.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4007695.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q9UR07Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyDM

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00751DMDM DNA binding domainFamilyInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF20266Mab-21_CMab-21 protein HhH/H2TH-like domainDomainInterproscan
PF04969CSCS domainDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR053134FamilyRNA-directed DNA polymerase homologInterproscan
IPR001969Active_siteAspartic peptidase, active siteInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001275DomainDM DNA-binding domainInterproscan
IPR026607FamilyDMRT familyInterproscan
IPR036407Homologous_superfamilyDM DNA-binding domain superfamilyInterproscan
IPR051560FamilyMAM domain-containing proteinInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000998DomainMAM domainInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR046906DomainMab-21-like, HhH/H2TH-like domainInterproscan
IPR024810FamilyMAB21L/Cyclic GMP-AMP synthase-like receptorInterproscan
IPR007052DomainCS domainInterproscan
IPR008978Homologous_superfamilyHSP20-like chaperoneInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR044563FamilyProtein Sgt1-likeInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR002052Conserved_siteDNA methylase, N-6 adenine-specific, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINInterproscan
PTHR12322DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRTInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23282APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR10656CELL FATE DETERMINING PROTEIN MAB21-RELATEDInterproscan
PTHR45862PROTEIN SGT1 HOMOLOGInterproscan
PTHR22930UNCHARACTERIZEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007548Biological Processsex differentiationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0051087Molecular Functionprotein-folding chaperone bindingInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0032259Biological ProcessmethylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26731CHX, KHA, nhaS4; K+:H+ antiporter-Domain-containing proteins not elsewhere classifiedko04990deepkoala
Transportersko02000deepkoala

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