Detailed information of Aala_g1378.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCH2405858.1, hypothetical protein [Nitrosopumilus sp.]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P04323Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8I7P9Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13936HTH_38Helix-turn-helix domainDomainInterproscan
PF13358DDE_3DDE superfamily endonucleaseDomainInterproscan
PF01498HTH_Tnp_Tc3_2TransposaseFamilyInterproscan
PF02996PrefoldinPrefoldin subunitCoiled-coilInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025246DomainTransposase IS30-like HTH domainInterproscan
IPR038717DomainTc1-like transposase, DDE domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR002492DomainTransposase, Tc1-likeInterproscan
IPR047655FamilyTransposase IS630-likeInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR052338FamilyTransposase_5Interproscan
IPR003994FamilyUbiquitously expressed transcript protein UXTInterproscan
IPR004127FamilyPrefoldin alpha-likeInterproscan
IPR009053Homologous_superfamilyPrefoldinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23022TRANSPOSABLE ELEMENT-RELATEDInterproscan
PTHR13345MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10Interproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22955RETROTRANSPOSONInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006313Biological ProcessDNA transpositionInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003714Molecular Functiontranscription corepressor activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26537UXT; protein UXT-Mitochondrial biogenesisko03029deepkoala

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