Detailed information of Aala_g138.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_014352815.1, PREDICTED: zinc finger MYM-type protein 6-like [Latimeria chalumnae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6P1E8EF-hand calcium-binding domain-containing protein 6 OS=Mus musculus OX=10090 GN=Efcab6 PE=1 SV=2
Q5THR3EF-hand calcium-binding domain-containing protein 6 OS=Homo sapiens OX=9606 GN=EFCAB6 PE=1 SV=1
Q4R8T1EF-hand calcium-binding domain-containing protein 6 (Fragment) OS=Macaca fascicularis OX=9541 GN=EFCAB6 PE=2 SV=2
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF21787TNP-like_RNaseH_NTNP-like, RNase H N-terminal domainDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF21788TNP-like_GBDTNP-like, GTP-binding insertion domainDomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF01612DNA_pol_A_exo13'-5' exonucleaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR048365DomainTransposable element P transposase-like, RNase H domain, N-terminalInterproscan
IPR038441Homologous_superfamilyTHAP-type zinc finger superfamilyInterproscan
IPR048366DomainTransposable element P transposase-like, GTP-binding insertion domainInterproscan
IPR051725FamilySAM and SH3 domain-containing proteinInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR002048DomainEF-hand domainInterproscan
IPR052603FamilyEF-hand calcium-binding domain-containing protein 6Interproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR036802Homologous_superfamilyATP:guanido phosphotransferase, N-terminal domain superfamilyInterproscan
IPR006580DomainZinc finger, TTF-typeInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR052144FamilypiRNA biogenesis EXD1-related proteinInterproscan
IPR002562Domain3'-5' exonuclease domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR47577THAP DOMAIN-CONTAINING PROTEIN 6Interproscan
PTHR12301SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATEDInterproscan
PTHR20875EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATEDInterproscan
PTHR45749-Interproscan
PTHR46628PIRNA BIOGENESIS PROTEIN EXD1Interproscan
PTHR11697GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016301Molecular Functionkinase activityInterproscan
GO:0016772Molecular Functiontransferase activity, transferring phosphorus-containing groupsInterproscan
GO:0034587Biological ProcesspiRNA processingInterproscan
GO:1990923Cellular ComponentPET complexInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0008408Molecular Function3'-5' exonuclease activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18740EXD1, EGL; exonuclease 3'-5' domain-containing protein 1-Messenger RNA biogenesisko03019deepkoala

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