Detailed information of Aala_g1393.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFT19364.1, integrase catalytic domain-containing protein [Trichonephila clavipes]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q04202Transposable element Tcb2 transposase OS=Caenorhabditis briggsae OX=6238 PE=3 SV=1
P35072Transposable element Tcb1 transposase OS=Caenorhabditis briggsae OX=6238 PE=3 SV=1
P03934Transposable element Tc1 transposase OS=Caenorhabditis elegans OX=6239 GN=tc1a PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF13358DDE_3DDE superfamily endonucleaseDomainInterproscan
PF12352V-SNARE_CSnare region anchored in the vesicle membrane C-terminusDomainInterproscan
PF16574CEP209_CC5Coiled-coil region of centrosome protein CE290Coiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR052338FamilyTransposase_5Interproscan
IPR038717DomainTc1-like transposase, DDE domainInterproscan
IPR023601FamilyGolgi SNAP receptor complex, subunit 1Interproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR042099Homologous_superfamilyANL, N-terminal domainInterproscan
IPR051087FamilyMitochondrial Acyl-CoA Synthetase Medium-ChainInterproscan
IPR026201FamilyCentrosomal protein of 290kDaInterproscan
IPR032321DomainCentrosomal protein of 290kDa, coiled-coil regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR23022TRANSPOSABLE ELEMENT-RELATEDInterproscan
PTHR21094GOS-28 SNARE- RELATEDInterproscan
PTHR43605ACYL-COENZYME A SYNTHETASEInterproscan
PTHR18879CENTROSOMAL PROTEIN OF 290 KDAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0005484Molecular FunctionSNAP receptor activityInterproscan
GO:0005797Cellular ComponentGolgi medial cisternaInterproscan
GO:0005801Cellular Componentcis-Golgi networkInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006906Biological Processvesicle fusionInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0031201Cellular ComponentSNARE complexInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0004321Molecular Functionfatty-acyl-CoA synthase activityInterproscan
GO:0006633Biological Processfatty acid biosynthetic processInterproscan
GO:0006637Biological Processacyl-CoA metabolic processInterproscan
GO:0015645Molecular Functionfatty acid ligase activityInterproscan
GO:0034451Cellular Componentcentriolar satelliteInterproscan
GO:0035869Cellular Componentciliary transition zoneInterproscan
GO:0097711Biological Processciliary basal body-plasma membrane dockingInterproscan
GO:1905349Biological Processciliary transition zone assemblyInterproscan
GO:1905515Biological Processnon-motile cilium assemblyInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K16533CEP290, NPHP6; centrosomal protein CEP290-Cilium and associated proteinsko03037deepkoala

TOP