Detailed information of Aala_g140.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047488218.1, uncharacterized protein LOC125038695 [Penaeus chinensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q03274Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1
Q2TBW7Sorting nexin-2 OS=Bos taurus OX=9913 GN=SNX2 PE=2 SV=1
O60749Sorting nexin-2 OS=Homo sapiens OX=9606 GN=SNX2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00787PXPX domainDomainInterproscan
PF00538Linker_histonelinker histone H1 and H5 familyDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF10545MADF_DNA_bdgAlcohol dehydrogenase transcription factor Myb/SANT-likeDomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001683DomainPhox homologyInterproscan
IPR036871Homologous_superfamilyPX domain superfamilyInterproscan
IPR002052Conserved_siteDNA methylase, N-6 adenine-specific, conserved siteInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR005818DomainLinker histone H1/H5, domain H15Interproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR033336FamilyStabilizer of axonemal microtubules 1/2Interproscan
IPR006578DomainMADF domainInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR050117FamilyMitogen-activated protein kinaseInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR017072FamilyTranscription elongation factor Spt6Interproscan
IPR023298Homologous_superfamilyP-type ATPase, transmembrane domain superfamilyInterproscan
IPR023323Homologous_superfamilyTex-like domain superfamilyInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR10555SORTING NEXINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR31516STABILIZER OF AXONEMAL MICROTUBULES 2Interproscan
PTHR21505UNCHARACTERIZEDInterproscan
PTHR24055MITOGEN-ACTIVATED PROTEIN KINASEInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6Interproscan
PTHR22955RETROTRANSPOSONInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0032259Biological ProcessmethylationInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0010008Cellular Componentendosome membraneInterproscan
GO:0034498Biological Processearly endosome to Golgi transportInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0035556Biological Processintracellular signal transductionInterproscan
GO:0042073Biological Processintraciliary transportInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0008023Cellular Componenttranscription elongation factor complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan

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